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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

5 rows where GC_content = "39.3305439330544"

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Species_name 3

  • Aequorea victoria 3
  • Aequorea coerulescens 1
  • Aequorea macrodactyla 1

Is_annotated 2

  • 1 3
  • 0 2

Sequence_status 1

  • observed 5

Is_protein_coding_sequence 1

  • 1 5
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
AX813335 Aequorea coerulescens 39.3305439330544 717.0 observed 1 0
CS131445 Aequorea victoria 39.3305439330544 717.0 observed 1 1
CS131452 Aequorea victoria 39.3305439330544 717.0 observed 1 1
CS131455 Aequorea victoria 39.3305439330544 717.0 observed 1 1
HI931623 Aequorea macrodactyla 39.3305439330544 717.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
Powered by Datasette · Queries took 276.587ms · Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT