Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

11,917 rows where Is_annotated = 0 and Is_protein_coding_sequence = 0

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Sequence_status 1

Is_protein_coding_sequence 1

  • - · 11,917 ✖

Is_annotated 1

  • - · 11,917 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
A34791 Viral hemorrhagic septicemia virus 49.9451754385965 1824.0 observed 0 0
A34795 Viral hemorrhagic septicemia virus 50.1089324618736 459.0 observed 0 0
A34796 Viral hemorrhagic septicemia virus 46.2882096069869 229.0 observed 0 0
A34797 Viral hemorrhagic septicemia virus 49.9451754385965 1824.0 observed 0 0
A34798 Viral hemorrhagic septicemia virus 49.9176276771005 1821.0 observed 0 0
A81883 Actinia equina 42.9054054054054 888.0 observed 0 0
AX008608 Zobellia galactanivorans 39.6068796068796 2035.0 observed 0 0
AX008610 Zobellia galactanivorans 42.2222222222222 1440.0 observed 0 0
AX010750 Salmon pancreas disease virus 56.111218381927 5179.0 observed 0 0
AX021075 Takifugu rubripes 45.3333333333333 300.0 observed 0 0
AX021078 Takifugu rubripes 47.6635514018692 107.0 observed 0 0
AX021090 Takifugu rubripes 22.2222222222222 9.0 observed 0 0
AX021093 Takifugu rubripes 25.0 8.0 observed 0 0
AX021096 Takifugu rubripes 12.5 16.0 observed 0 0
AX021099 Takifugu rubripes 49.2374727668845 459.0 observed 0 0
AX021103 Takifugu rubripes 28.5714285714286 7.0 observed 0 0
AX021107 Takifugu rubripes 37.5 8.0 observed 0 0
AX021111 Takifugu rubripes 12.5 8.0 observed 0 0
AX021115 Takifugu rubripes 12.5 8.0 observed 0 0
AX035832 Haliotis tuberculata 51.063829787234 1269.0 observed 0 0
AX035833 Haliotis tuberculata 46.5393794749403 1257.0 observed 0 0
AX035834 Haliotis tuberculata 44.524959742351 1242.0 observed 0 0
AX035835 Haliotis tuberculata 45.682001614205 1239.0 observed 0 0
AX035836 Haliotis tuberculata 45.1587301587302 1260.0 observed 0 0
AX035837 Haliotis tuberculata 45.8033573141487 1251.0 observed 0 0
AX035838 Haliotis tuberculata 51.4474772539289 1209.0 observed 0 0
AX035839 Haliotis tuberculata 47.0358306188925 1535.0 observed 0 0
AX035841 Haliotis tuberculata 47.242206235012 1251.0 observed 0 0
AX035842 Haliotis tuberculata 45.9807073954984 1244.0 observed 0 0
AX035844 Haliotis tuberculata 48.3173076923077 1248.0 observed 0 0
AX035845 Haliotis tuberculata 51.2013256006628 1207.0 observed 0 0
AX035846 Haliotis tuberculata 47.2186287192756 1546.0 observed 0 0
AX035848 Megathura crenulata 43.3977455716586 1242.0 observed 0 0
AX035849 Megathura crenulata 44.7411003236246 1236.0 observed 0 0
AX035850 Megathura crenulata 50.6224066390041 241.0 observed 0 0
AX035852 Megathura crenulata 46.7105263157895 760.0 observed 0 0
AX035853 Megathura crenulata 47.0588235294118 323.0 observed 0 0
AX035880 Haliotis tuberculata 50.9850275807723 1269.0 observed 0 0
AX035883 Haliotis tuberculata 45.9742351046699 1242.0 observed 0 0
AX035884 Haliotis tuberculata 47.3349244232299 1257.0 observed 0 0
AX035885 Megathura crenulata 45.4256165473349 1257.0 observed 0 0
AX035886 Megathura crenulata 45.8532695374801 1254.0 observed 0 0
AX035887 Megathura crenulata 49.1159135559921 509.0 observed 0 0
AX035889 Megathura crenulata 44.5512820512821 1248.0 observed 0 0
AX035890 Megathura crenulata 43.6754176610979 1257.0 observed 0 0
AX035891 Megathura crenulata 43.3414043583535 1239.0 observed 0 0
AX035892 Haliotis tuberculata 45.003996802558 1251.0 observed 0 0
AX035893 Haliotis tuberculata 46.6666666666667 1185.0 observed 0 0
AX048458 Aeromonas salmonicida 50.4761904761905 315.0 observed 0 0
AX048459 Aeromonas salmonicida 50.4761904761905 315.0 observed 0 0
AX048555 Pseudoalteromonas haloplanktis 48.8817891373802 313.0 observed 0 0
AX048560 Shewanella putrefaciens 54.0845070422535 355.0 observed 0 0
AX048561 Shewanella putrefaciens 54.0845070422535 355.0 observed 0 0
AX048572 Synechococcus elongatus pcc 6301 54.3147208121827 394.0 observed 0 0
AX048573 Synechococcus elongatus pcc 6301 54.3147208121827 394.0 observed 0 0
AX048582 Vibrio cholerae 51.7711171662125 367.0 observed 0 0
AX048583 Vibrio cholerae 51.7711171662125 367.0 observed 0 0
AX077091 Pyrococcus furiosus 44.0 25.0 observed 0 0
AX077092 Pyrococcus furiosus 37.037037037037 27.0 observed 0 0
AX077099 Pyrococcus furiosus 56.0 25.0 observed 0 0
AX077100 Pyrococcus furiosus 37.037037037037 27.0 observed 0 0
AX077102 Pyrococcus furiosus 42.8571428571428 511.0 observed 0 0
AX077103 Pyrococcus furiosus 42.9141716566866 501.0 observed 0 0
AX077104 Pyrococcus furiosus 42.3868312757202 486.0 observed 0 0
AX083221 Candidatus endobugula sertula 41.1764705882353 17.0 observed 0 0
AX083222 Candidatus endobugula sertula 46.6666666666667 15.0 observed 0 0
AX083223 Candidatus endobugula sertula 50.0 18.0 observed 0 0
AX083224 Candidatus endobugula sertula 50.0 18.0 observed 0 0
AX083225 Candidatus endobugula sertula 48.2758620689655 29.0 observed 0 0
AX083226 Candidatus endobugula sertula 68.0 25.0 observed 0 0
AX083227 Candidatus endobugula sertula 50.0 22.0 observed 0 0
AX083228 Candidatus endobugula sertula 63.1578947368421 19.0 observed 0 0
AX083249 Candidatus endobugula sertula 45.3833333333333 6000.0 observed 0 0
AX083250 Candidatus endobugula sertula 43.2553191489362 4700.0 observed 0 0
AX083251 Candidatus endobugula sertula 38.3397819205065 5686.0 observed 0 0
AX083252 Candidatus endobugula sertula 34.0430016863406 4744.0 observed 0 0
AX083253 Candidatus endobugula sertula 30.7062436028659 1954.0 observed 0 0
AX083254 Candidatus endobugula sertula 41.1302395209581 2672.0 observed 0 0
AX083255 Candidatus endobugula sertula 35.2720450281426 2132.0 observed 0 0
AX083256 Candidatus endobugula sertula 33.6560627017059 2169.0 observed 0 0
AX083257 Candidatus endobugula sertula 39.6778042959427 8380.0 observed 0 0
AX088436 Haliotis tuberculata 51.063829787234 1269.0 observed 0 0
AX088437 Haliotis tuberculata 46.5393794749403 1257.0 observed 0 0
AX088438 Haliotis tuberculata 44.524959742351 1242.0 observed 0 0
AX088439 Haliotis tuberculata 45.682001614205 1239.0 observed 0 0
AX088440 Haliotis tuberculata 45.1587301587302 1260.0 observed 0 0
AX088441 Haliotis tuberculata 45.8033573141487 1251.0 observed 0 0
AX088442 Haliotis tuberculata 51.4474772539289 1209.0 observed 0 0
AX088443 Haliotis tuberculata 47.0358306188925 1535.0 observed 0 0
AX088445 Haliotis tuberculata 47.242206235012 1251.0 observed 0 0
AX088446 Haliotis tuberculata 45.9807073954984 1244.0 observed 0 0
AX088448 Haliotis tuberculata 48.3173076923077 1248.0 observed 0 0
AX088449 Haliotis tuberculata 51.2013256006628 1207.0 observed 0 0
AX088450 Haliotis tuberculata 47.2186287192756 1546.0 observed 0 0
AX088452 Megathura crenulata 43.3977455716586 1242.0 observed 0 0
AX088453 Megathura crenulata 44.7411003236246 1236.0 observed 0 0
AX088454 Megathura crenulata 50.6224066390041 241.0 observed 0 0
AX088456 Megathura crenulata 46.7105263157895 760.0 observed 0 0
AX088457 Megathura crenulata 47.0588235294118 323.0 observed 0 0
AX088484 Haliotis tuberculata 50.9850275807723 1269.0 observed 0 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );