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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

13 rows where Is_annotated = 0, Is_protein_coding_sequence = 0 and Species_name = "Conus magus"

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These facets timed out: Is_annotated, Species_name

Sequence_status 1

  • observed 13

Is_protein_coding_sequence 1

  • - · 13 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
BD261395 Conus magus 53.3039647577093 227.0 observed 0 0
BD394984 Conus magus 51.4423076923077 208.0 observed 0 0
BD394985 Conus magus 52.8169014084507 142.0 observed 0 0
BD394986 Conus magus 52.112676056338 142.0 observed 0 0
BD394987 Conus magus 53.5211267605634 142.0 observed 0 0
DD012741 Conus magus 51.8867924528302 318.0 observed 0 0
DD012743 Conus magus 51.1811023622047 254.0 observed 0 0
DD101347 Conus magus 40.7222914072229 803.0 observed 0 0
DD101348 Conus magus 43.140243902439 656.0 observed 0 0
DD101349 Conus magus 41.5824915824916 594.0 observed 0 0
DD101350 Conus magus 39.5209580838323 501.0 observed 0 0
DD101351 Conus magus 40.7488986784141 454.0 observed 0 0
FB299888 Conus magus 53.3039647577093 227.0 observed 0 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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