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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

26 rows where Is_annotated = 0, Is_protein_coding_sequence = 0 and Species_name = "Rhodothermus marinus"

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
AX339680 Rhodothermus marinus 64.6776771443793 1877.0 observed 0 0
CS057394 Rhodothermus marinus 64.3009226401703 1409.0 observed 0 0
CS057395 Rhodothermus marinus 56.5235929505401 7036.0 observed 0 0
CS057396 Rhodothermus marinus 56.5198863636364 7040.0 observed 0 0
CS057397 Rhodothermus marinus 60.1379310344828 4350.0 observed 0 0
CS057398 Rhodothermus marinus 47.6190476190476 42.0 observed 0 0
CS057399 Rhodothermus marinus 60.0045526974733 4393.0 observed 0 0
CS057400 Rhodothermus marinus 59.2769169646404 5034.0 observed 0 0
CS057401 Rhodothermus marinus 59.8788379457525 7263.0 observed 0 0
CS057402 Rhodothermus marinus 59.4914930223667 5231.0 observed 0 0
CS057403 Rhodothermus marinus 59.2047409673103 5231.0 observed 0 0
CS057404 Rhodothermus marinus 59.070494044132 5121.0 observed 0 0
LQ000522 Rhodothermus marinus 64.5599527466037 1693.0 observed 0 0
LQ000528 Rhodothermus marinus 51.8518518518519 27.0 observed 0 0
LQ000529 Rhodothermus marinus 43.3333333333333 30.0 observed 0 0
LQ000530 Rhodothermus marinus 40.0 35.0 observed 0 0
LQ000531 Rhodothermus marinus 51.7241379310345 29.0 observed 0 0
LQ000532 Rhodothermus marinus 36.6666666666667 30.0 observed 0 0
LQ000533 Rhodothermus marinus 59.2592592592593 27.0 observed 0 0
LQ000534 Rhodothermus marinus 40.625 32.0 observed 0 0
LQ000535 Rhodothermus marinus 45.4545454545455 33.0 observed 0 0
LQ000536 Rhodothermus marinus 46.6666666666667 30.0 observed 0 0
LQ000537 Rhodothermus marinus 62.0689655172414 29.0 observed 0 0
LQ000538 Rhodothermus marinus 48.3870967741936 31.0 observed 0 0
MD217558 Rhodothermus marinus 62.593783494105 1866.0 observed 0 0
PA548966 Rhodothermus marinus 62.593783494105 1866.0 observed 0 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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