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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

25 rows where Is_annotated = 0, Is_protein_coding_sequence = 0 and Species_name = "Synechococcus elongatus pcc 7942 = fachb-805"

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These facets timed out: Sequence_status, Species_name

Is_protein_coding_sequence 1

  • - · 25 ✖

Is_annotated 1

  • - · 25 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
DI394141 Synechococcus elongatus pcc 7942 = fachb-805 53.448275862069 2204.0 observed 0 0
DI394163 Synechococcus elongatus pcc 7942 = fachb-805 53.1065088757396 676.0 observed 0 0
DI394166 Synechococcus elongatus pcc 7942 = fachb-805 47.6683937823834 579.0 observed 0 0
DI394220 Synechococcus elongatus pcc 7942 = fachb-805 56.3622170179547 1281.0 observed 0 0
GN042131 Synechococcus elongatus pcc 7942 = fachb-805 57.0081709616593 3182.0 observed 0 0
HH937574 Synechococcus elongatus pcc 7942 = fachb-805 53.448275862069 2204.0 observed 0 0
HH937602 Synechococcus elongatus pcc 7942 = fachb-805 53.1065088757396 676.0 observed 0 0
HH937605 Synechococcus elongatus pcc 7942 = fachb-805 47.6683937823834 579.0 observed 0 0
HH937674 Synechococcus elongatus pcc 7942 = fachb-805 56.3622170179547 1281.0 observed 0 0
HV331715 Synechococcus elongatus pcc 7942 = fachb-805 53.448275862069 2204.0 observed 0 0
HV331740 Synechococcus elongatus pcc 7942 = fachb-805 53.1065088757396 676.0 observed 0 0
HV331743 Synechococcus elongatus pcc 7942 = fachb-805 47.6683937823834 579.0 observed 0 0
HV331800 Synechococcus elongatus pcc 7942 = fachb-805 56.3622170179547 1281.0 observed 0 0
HW637696 Synechococcus elongatus pcc 7942 = fachb-805 53.448275862069 2204.0 observed 0 0
HW637721 Synechococcus elongatus pcc 7942 = fachb-805 53.1065088757396 676.0 observed 0 0
HW637724 Synechococcus elongatus pcc 7942 = fachb-805 47.6683937823834 579.0 observed 0 0
HW637781 Synechococcus elongatus pcc 7942 = fachb-805 56.3622170179547 1281.0 observed 0 0
JD009835 Synechococcus elongatus pcc 7942 = fachb-805 53.448275862069 2204.0 observed 0 0
JD009863 Synechococcus elongatus pcc 7942 = fachb-805 53.1065088757396 676.0 observed 0 0
JD009866 Synechococcus elongatus pcc 7942 = fachb-805 47.6683937823834 579.0 observed 0 0
JD009935 Synechococcus elongatus pcc 7942 = fachb-805 56.3622170179547 1281.0 observed 0 0
LF859665 Synechococcus elongatus pcc 7942 = fachb-805 53.448275862069 2204.0 observed 0 0
LF859690 Synechococcus elongatus pcc 7942 = fachb-805 53.1065088757396 676.0 observed 0 0
LF859693 Synechococcus elongatus pcc 7942 = fachb-805 47.6683937823834 579.0 observed 0 0
LF859750 Synechococcus elongatus pcc 7942 = fachb-805 56.3622170179547 1281.0 observed 0 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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