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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

23 rows where Is_annotated = 0, Is_protein_coding_sequence = 0 and Species_name = "Thraustochytrium sp."

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated

Species_name 1

  • Thraustochytrium sp. · 23 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
AX214448 Thraustochytrium sp. 55.3129548762737 687.0 observed 0 0
AX214454 Thraustochytrium sp. 55.123339658444 1054.0 observed 0 0
CS486200 Thraustochytrium sp. 63.7062339880444 1171.0 observed 0 0
CS486255 Thraustochytrium sp. 55.1000953288846 1049.0 observed 0 0
HC055562 Thraustochytrium sp. 46.6586393738712 9966.0 observed 0 0
HV969120 Thraustochytrium sp. 37.7952755905512 254.0 observed 0 0
HV969133 Thraustochytrium sp. 38.4037015615963 1729.0 observed 0 0
HV969135 Thraustochytrium sp. 30.7692307692308 39.0 observed 0 0
HZ458502 Thraustochytrium sp. 37.7952755905512 254.0 observed 0 0
HZ458515 Thraustochytrium sp. 38.4037015615963 1729.0 observed 0 0
HZ458517 Thraustochytrium sp. 30.7692307692308 39.0 observed 0 0
JA739115 Thraustochytrium sp. 37.7952755905512 254.0 observed 0 0
JA739141 Thraustochytrium sp. 38.4037015615963 1729.0 observed 0 0
JA739145 Thraustochytrium sp. 30.7692307692308 39.0 observed 0 0
MA896401 Thraustochytrium sp. 37.7952755905512 254.0 observed 0 0
MA896414 Thraustochytrium sp. 38.4037015615963 1729.0 observed 0 0
MA896416 Thraustochytrium sp. 30.7692307692308 39.0 observed 0 0
MB454757 Thraustochytrium sp. 48.868253047011 1723.0 observed 0 0
MB454778 Thraustochytrium sp. 62.2448979591837 490.0 observed 0 0
MB454779 Thraustochytrium sp. 60.8565737051793 1004.0 observed 0 0
MB454780 Thraustochytrium sp. 59.1525423728814 590.0 observed 0 0
MB454781 Thraustochytrium sp. 57.96875 640.0 observed 0 0
MB454783 Thraustochytrium sp. 60.7669616519174 1017.0 observed 0 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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