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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

7 rows where Is_annotated = 0, Is_protein_coding_sequence = 1 and Sequence_length = "828.0"

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Suggested facets: GC_content

Species_name 4

  • Uncultured marine bacterium 66a03 3
  • Geobacillus kaustophilus 2
  • Shewanella oneidensis 1
  • Vibrio parahaemolyticus rimd 2210633 1

Sequence_status 1

  • observed 7

Is_protein_coding_sequence 1

  • 1 · 7 ✖

Is_annotated 1

  • - · 7 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
DI342078 Uncultured marine bacterium 66a03 34.7826086956522 828.0 observed 1 0
DI488592 Uncultured marine bacterium 66a03 50.6038647342995 828.0 observed 1 0
DM171005 Geobacillus kaustophilus 53.8647342995169 828.0 observed 1 0
GN060310 Geobacillus kaustophilus 53.8647342995169 828.0 observed 1 0
HD009032 Vibrio parahaemolyticus rimd 2210633 49.5169082125604 828.0 observed 1 0
HH766873 Shewanella oneidensis 46.9806763285024 828.0 observed 1 0
LG178656 Uncultured marine bacterium 66a03 50.6038647342995 828.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
Powered by Datasette · Queries took 486.321ms · Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT