Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

21,402 rows where Is_annotated = 0, Is_protein_coding_sequence = 1 and Sequence_status = "observed"

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Sequence_status 1

  • observed · 21,402 ✖

Is_protein_coding_sequence 1

  • 1 · 21,402 ✖

Is_annotated 1

  • - · 21,402 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
A10182 Viral hemorrhagic septicemia virus 50.0641025641026 1560.0 observed 1 0
A34792 Viral hemorrhagic septicemia virus 49.7803806734993 1366.0 observed 1 0
A34793 Viral hemorrhagic septicemia virus 50.3448275862069 1305.0 observed 1 0
A34794 Viral hemorrhagic septicemia virus 45.1754385964912 228.0 observed 1 0
AX010763 Salmon pancreas disease virus 53.4313725490196 204.0 observed 1 0
AX018860 Loligo vulgaris 44.0552016985138 942.0 observed 1 0
AX021087 Takifugu rubripes 46.0674157303371 178.0 observed 1 0
AX024038 Aequorea victoria 47.5598935226264 3381.0 observed 1 0
AX035881 Haliotis tuberculata 52.7240773286468 569.0 observed 1 0
AX035919 Haliotis tuberculata 53.2994923857868 591.0 observed 1 0
AX035921 Haliotis kamtschatkana assimilis 47.1622701838529 1251.0 observed 1 0
AX035926 Haliotis tuberculata 47.2868217054264 1548.0 observed 1 0
AX048554 Pseudoalteromonas haloplanktis 63.4854771784232 241.0 observed 1 0
AX048576 Thermotoga maritima 62.0786516853933 356.0 observed 1 0
AX048577 Thermotoga maritima 62.0786516853933 356.0 observed 1 0
AX057689 Aequorea victoria 35.5648535564854 717.0 observed 1 0
AX077089 Pyrococcus furiosus 42.5925925925926 486.0 observed 1 0
AX081745 Pyrococcus furiosus 41.6422287390029 2046.0 observed 1 0
AX083229 Candidatus endobugula sertula 47.3015873015873 315.0 observed 1 0
AX083231 Candidatus endobugula sertula 38.9945652173913 736.0 observed 1 0
AX083233 Candidatus endobugula sertula 48.0769230769231 312.0 observed 1 0
AX083235 Candidatus endobugula sertula 50.0 324.0 observed 1 0
AX083237 Candidatus endobugula sertula 50.974025974026 308.0 observed 1 0
AX083241 Candidatus endobugula sertula 52.6315789473684 304.0 observed 1 0
AX083243 Candidatus endobugula sertula 45.5414012738853 314.0 observed 1 0
AX083245 Candidatus endobugula sertula 53.2679738562092 306.0 observed 1 0
AX083247 Candidatus endobugula sertula 53.0744336569579 309.0 observed 1 0
AX088444 Haliotis tuberculata 48.0558325024925 1003.0 observed 1 0
AX088447 Haliotis tuberculata 47.3306772908367 1255.0 observed 1 0
AX088451 Megathura crenulata 43.4332988624612 967.0 observed 1 0
AX088455 Megathura crenulata 43.8356164383562 949.0 observed 1 0
AX088458 Megathura crenulata 45.8502024291498 988.0 observed 1 0
AX088459 Megathura crenulata 47.741935483871 310.0 observed 1 0
AX088485 Haliotis tuberculata 52.7240773286468 569.0 observed 1 0
AX088486 Haliotis tuberculata 49.9197431781701 1246.0 observed 1 0
AX088492 Megathura crenulata 43.796394485684 943.0 observed 1 0
AX088515 Haliotis tuberculata 50.86887835703 1266.0 observed 1 0
AX088516 Haliotis tuberculata 46.5393794749403 1257.0 observed 1 0
AX088517 Haliotis tuberculata 44.524959742351 1242.0 observed 1 0
AX088518 Haliotis tuberculata 45.682001614205 1239.0 observed 1 0
AX088519 Haliotis tuberculata 45.1587301587302 1260.0 observed 1 0
AX088520 Haliotis tuberculata 45.8033573141487 1251.0 observed 1 0
AX088521 Haliotis tuberculata 51.4474772539289 1209.0 observed 1 0
AX088522 Haliotis tuberculata 47.0703125 1536.0 observed 1 0
AX088523 Haliotis tuberculata 53.2994923857868 591.0 observed 1 0
AX088524 Haliotis tuberculata 49.9598393574297 1245.0 observed 1 0
AX088526 Haliotis tuberculata 46.0547504025765 1242.0 observed 1 0
AX088527 Haliotis tuberculata 47.255369928401 1257.0 observed 1 0
AX088528 Haliotis tuberculata 48.3173076923077 1248.0 observed 1 0
AX088529 Haliotis tuberculata 51.1608623548922 1206.0 observed 1 0
AX088530 Haliotis tuberculata 47.2868217054264 1548.0 observed 1 0
AX088531 Megathura crenulata 43.3747412008282 966.0 observed 1 0
AX088532 Megathura crenulata 43.3977455716586 1242.0 observed 1 0
AX088533 Megathura crenulata 44.7411003236246 1236.0 observed 1 0
AX088534 Megathura crenulata 45.4256165473349 1257.0 observed 1 0
AX088535 Megathura crenulata 45.8532695374801 1254.0 observed 1 0
AX088536 Megathura crenulata 49.2156862745098 510.0 observed 1 0
AX088537 Megathura crenulata 43.7367303609342 942.0 observed 1 0
AX088538 Megathura crenulata 44.5512820512821 1248.0 observed 1 0
AX088539 Megathura crenulata 43.6754176610979 1257.0 observed 1 0
AX088540 Megathura crenulata 43.3414043583535 1239.0 observed 1 0
AX088541 Megathura crenulata 45.003996802558 1251.0 observed 1 0
AX088542 Megathura crenulata 46.6666666666667 1185.0 observed 1 0
AX088543 Megathura crenulata 47.8964401294498 309.0 observed 1 0
AX088594 Megathura crenulata 47.741935483871 310.0 observed 1 0
AX088645 Megathura crenulata 43.4332988624612 967.0 observed 1 0
AX111016 Shewanella putrefaciens 48.0136208853575 881.0 observed 1 0
AX127396 Bruguiera gymnorhiza 36.3057324840764 157.0 observed 1 0
AX127399 Bruguiera gymnorhiza 37.9120879120879 182.0 observed 1 0
AX135456 Thermococcus sp. jdf-3 56.2848562848563 2331.0 observed 1 0
AX137873 Archaeoglobus fulgidus 51.8087855297158 774.0 observed 1 0
AX172850 Anemonia manjano 46.231884057971 690.0 observed 1 0
AX172851 Zoanthus sp. 44.8275862068966 696.0 observed 1 0
AX172852 Zoanthus sp. 45.1149425287356 696.0 observed 1 0
AX172853 Discosoma striata 45.2074391988555 699.0 observed 1 0
AX172854 Discosoma sp. 45.2802359882006 678.0 observed 1 0
AX172855 Clavularia sp. 42.9463171036205 801.0 observed 1 0
AX207710 Aequorea victoria 61.3888888888889 720.0 observed 1 0
AX207711 Anemonia manjano 46.231884057971 690.0 observed 1 0
AX207712 Zoanthus sp. 44.8275862068966 696.0 observed 1 0
AX207713 Zoanthus sp. 45.1149425287356 696.0 observed 1 0
AX207714 Discosoma striata 45.2074391988555 699.0 observed 1 0
AX207715 Discosoma sp. 45.2802359882006 678.0 observed 1 0
AX207716 Clavularia sp. 42.9463171036205 801.0 observed 1 0
AX214450 Thraustochytrium sp. 57.8010471204189 955.0 observed 1 0
AX214452 Crypthecodinium cohnii 55.6497175141243 708.0 observed 1 0
AX233577 Anemonia manjano 46.231884057971 690.0 observed 1 0
AX233578 Zoanthus sp. 44.8275862068966 696.0 observed 1 0
AX233579 Zoanthus sp. 45.1149425287356 696.0 observed 1 0
AX233580 Discosoma striata 45.2074391988555 699.0 observed 1 0
AX233581 Discosoma sp. 45.2802359882006 678.0 observed 1 0
AX233582 Clavularia sp. 42.9463171036205 801.0 observed 1 0
AX233586 Aequorea victoria 61.3888888888889 720.0 observed 1 0
AX250560 Vargula hilgendorfii 42.6454445664105 1822.0 observed 1 0
AX250564 Aequorea victoria 42.3011844331641 591.0 observed 1 0
AX250565 Aequorea victoria 42.8087986463621 591.0 observed 1 0
AX250566 Aequorea victoria 42.8087986463621 591.0 observed 1 0
AX250567 Aequorea victoria 42.6807760141093 567.0 observed 1 0
AX250568 Aequorea victoria 42.687074829932 588.0 observed 1 0
AX250569 Aequorea victoria 42.687074829932 588.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );