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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

13 rows where Is_annotated = 0, Is_protein_coding_sequence = 1 and Species_name = "Branchiostoma floridae"

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These facets timed out: Species_name

Sequence_status 1

  • observed 13

Is_protein_coding_sequence 1

  • 1 · 13 ✖

Is_annotated 1

  • - · 13 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
FB335886 Branchiostoma floridae 54.2145593869732 522.0 observed 1 0
HC754151 Branchiostoma floridae 57.4074074074074 1512.0 observed 1 0
HH767225 Branchiostoma floridae 54.2145593869732 522.0 observed 1 0
HH767227 Branchiostoma floridae 48.1981981981982 444.0 observed 1 0
HH767231 Branchiostoma floridae 49.3333333333333 450.0 observed 1 0
HI183726 Branchiostoma floridae 58.0459770114943 696.0 observed 1 0
HI183727 Branchiostoma floridae 58.5858585858586 693.0 observed 1 0
HI183728 Branchiostoma floridae 56.9384835479256 699.0 observed 1 0
HI183733 Branchiostoma floridae 57.183908045977 696.0 observed 1 0
HI183735 Branchiostoma floridae 59.4488188976378 762.0 observed 1 0
HI183739 Branchiostoma floridae 57.1212121212121 660.0 observed 1 0
HI183740 Branchiostoma floridae 56.969696969697 660.0 observed 1 0
HI183743 Branchiostoma floridae 55.7077625570776 657.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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