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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

22 rows where Is_annotated = 0, Is_protein_coding_sequence = 1 and Species_name = "Haliotis tuberculata"

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These facets timed out: Is_annotated, Species_name

Sequence_status 1

  • observed 22

Is_protein_coding_sequence 1

  • 1 · 22 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
AX035881 Haliotis tuberculata 52.7240773286468 569.0 observed 1 0
AX035919 Haliotis tuberculata 53.2994923857868 591.0 observed 1 0
AX035926 Haliotis tuberculata 47.2868217054264 1548.0 observed 1 0
AX088444 Haliotis tuberculata 48.0558325024925 1003.0 observed 1 0
AX088447 Haliotis tuberculata 47.3306772908367 1255.0 observed 1 0
AX088485 Haliotis tuberculata 52.7240773286468 569.0 observed 1 0
AX088486 Haliotis tuberculata 49.9197431781701 1246.0 observed 1 0
AX088515 Haliotis tuberculata 50.86887835703 1266.0 observed 1 0
AX088516 Haliotis tuberculata 46.5393794749403 1257.0 observed 1 0
AX088517 Haliotis tuberculata 44.524959742351 1242.0 observed 1 0
AX088518 Haliotis tuberculata 45.682001614205 1239.0 observed 1 0
AX088519 Haliotis tuberculata 45.1587301587302 1260.0 observed 1 0
AX088520 Haliotis tuberculata 45.8033573141487 1251.0 observed 1 0
AX088521 Haliotis tuberculata 51.4474772539289 1209.0 observed 1 0
AX088522 Haliotis tuberculata 47.0703125 1536.0 observed 1 0
AX088523 Haliotis tuberculata 53.2994923857868 591.0 observed 1 0
AX088524 Haliotis tuberculata 49.9598393574297 1245.0 observed 1 0
AX088526 Haliotis tuberculata 46.0547504025765 1242.0 observed 1 0
AX088527 Haliotis tuberculata 47.255369928401 1257.0 observed 1 0
AX088528 Haliotis tuberculata 48.3173076923077 1248.0 observed 1 0
AX088529 Haliotis tuberculata 51.1608623548922 1206.0 observed 1 0
AX088530 Haliotis tuberculata 47.2868217054264 1548.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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