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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

18 rows where Is_annotated = 0, Is_protein_coding_sequence = 1 and Species_name = "Penaeus monodon"

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These facets timed out: Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_status 1

  • observed 18
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
HC004922 Penaeus monodon 58.75 480.0 observed 1 0
HC004925 Penaeus monodon 58.3333333333333 480.0 observed 1 0
HC004928 Penaeus monodon 59.0233545647558 471.0 observed 1 0
HC004931 Penaeus monodon 58.5987261146497 471.0 observed 1 0
MA806791 Penaeus monodon 51.8794656725691 3219.0 observed 1 0
MA806794 Penaeus monodon 51.9159456118665 2427.0 observed 1 0
MA806797 Penaeus monodon 50.9621353196772 3222.0 observed 1 0
MA806800 Penaeus monodon 52.2088353413655 2241.0 observed 1 0
MA806804 Penaeus monodon 45.6735496558505 2034.0 observed 1 0
MA806807 Penaeus monodon 51.5360983102919 1302.0 observed 1 0
MA806812 Penaeus monodon 62.1951219512195 492.0 observed 1 0
MP641898 Penaeus monodon 51.8794656725691 3219.0 observed 1 0
MP641994 Penaeus monodon 51.9159456118665 2427.0 observed 1 0
MP642032 Penaeus monodon 50.9621353196772 3222.0 observed 1 0
MP642153 Penaeus monodon 52.2088353413655 2241.0 observed 1 0
MP642252 Penaeus monodon 45.6735496558505 2034.0 observed 1 0
MP642308 Penaeus monodon 51.5360983102919 1302.0 observed 1 0
MP642402 Penaeus monodon 62.1951219512195 492.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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