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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

43 rows where Is_annotated = 0, Is_protein_coding_sequence = 1 and Species_name = "Renilla reniformis"

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These facets timed out: Is_annotated, Species_name

Sequence_status 1

  • observed 43

Is_protein_coding_sequence 1

  • 1 · 43 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
AX319692 Renilla reniformis 36.4316239316239 936.0 observed 1 0
AX456020 Renilla reniformis 36.4316239316239 936.0 observed 1 0
AX456161 Renilla reniformis 36.5487674169346 933.0 observed 1 0
AX666128 Renilla reniformis 62.2222222222222 720.0 observed 1 0
DD116165 Renilla reniformis 61.5277777777778 720.0 observed 1 0
DD258738 Renilla reniformis 40.4166666666667 720.0 observed 1 0
DI492870 Renilla reniformis 36.5384615384615 936.0 observed 1 0
DJ381358 Renilla reniformis 40.4166666666667 720.0 observed 1 0
DL071348 Renilla reniformis 36.5487674169346 933.0 observed 1 0
FW496606 Renilla reniformis 36.4316239316239 936.0 observed 1 0
HI369894 Renilla reniformis 36.4316239316239 936.0 observed 1 0
HV782108 Renilla reniformis 36.5487674169346 933.0 observed 1 0
HZ795482 Renilla reniformis 36.4316239316239 936.0 observed 1 0
JB223426 Renilla reniformis 36.4316239316239 936.0 observed 1 0
LF150338 Renilla reniformis 55.2350427350427 936.0 observed 1 0
LF169348 Renilla reniformis 55.2350427350427 936.0 observed 1 0
LG110145 Renilla reniformis 55.2350427350427 936.0 observed 1 0
LP049127 Renilla reniformis 36.4316239316239 936.0 observed 1 0
LQ019676 Renilla reniformis 55.2350427350427 936.0 observed 1 0
LQ046992 Renilla reniformis 55.2350427350427 936.0 observed 1 0
LQ826079 Renilla reniformis 36.4316239316239 936.0 observed 1 0
LY715369 Renilla reniformis 36.5384615384615 936.0 observed 1 0
LY747378 Renilla reniformis 55.2350427350427 936.0 observed 1 0
LY805015 Renilla reniformis 36.5487674169346 933.0 observed 1 0
MB443138 Renilla reniformis 55.2350427350427 936.0 observed 1 0
MP401791 Renilla reniformis 55.2350427350427 936.0 observed 1 0
MP429797 Renilla reniformis 55.2350427350427 936.0 observed 1 0
MP441747 Renilla reniformis 55.2350427350427 936.0 observed 1 0
MP443144 Renilla reniformis 55.2350427350427 936.0 observed 1 0
MP447877 Renilla reniformis 55.2350427350427 936.0 observed 1 0
MP448852 Renilla reniformis 55.1282051282051 936.0 observed 1 0
MP528206 Renilla reniformis 55.2350427350427 936.0 observed 1 0
MP528995 Renilla reniformis 55.2350427350427 936.0 observed 1 0
MP530083 Renilla reniformis 55.2350427350427 936.0 observed 1 0
MP939630 Renilla reniformis 55.1282051282051 936.0 observed 1 0
OF130043 Renilla reniformis 55.2350427350427 936.0 observed 1 0
OF130100 Renilla reniformis 55.2350427350427 936.0 observed 1 0
OF130157 Renilla reniformis 55.2350427350427 936.0 observed 1 0
OF130214 Renilla reniformis 55.2350427350427 936.0 observed 1 0
OF130271 Renilla reniformis 55.2350427350427 936.0 observed 1 0
OF130328 Renilla reniformis 55.2350427350427 936.0 observed 1 0
OF296735 Renilla reniformis 55.2350427350427 936.0 observed 1 0
OF296792 Renilla reniformis 55.2350427350427 936.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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