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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

8 rows where Is_annotated = 0, Is_protein_coding_sequence = 1 and Species_name = "Thiocapsa roseopersicina"

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
HB878915 Thiocapsa roseopersicina 65.2719665271967 717.0 observed 1 0
HC499600 Thiocapsa roseopersicina 66.5837479270315 1206.0 observed 1 0
HC935635 Thiocapsa roseopersicina 65.2719665271967 717.0 observed 1 0
HC936324 Thiocapsa roseopersicina 65.2719665271967 717.0 observed 1 0
HC938227 Thiocapsa roseopersicina 68.396770472895 867.0 observed 1 0
HC964618 Thiocapsa roseopersicina 65.2777777777778 720.0 observed 1 0
HD000521 Thiocapsa roseopersicina 63.477366255144 972.0 observed 1 0
HD017143 Thiocapsa roseopersicina 65.6195462478185 1146.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
Powered by Datasette · Queries took 5522.237ms · Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT