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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

18 rows where Is_annotated = 0 and Sequence_length = "384.0"

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Suggested facets: GC_content

Species_name 6

  • Photobacterium profundum 11
  • Dendronephthya gigantea 2
  • Gadus morhua 2
  • Marine gamma proteobacterium htcc2080 1
  • Oncorhynchus mykiss 1
  • Psammechinus miliaris 1

Is_protein_coding_sequence 2

  • 1 16
  • 0 2

Sequence_status 1

  • observed 18

Is_annotated 1

  • - · 18 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
AX804243 Gadus morhua 51.5625 384.0 observed 0 0
AX812029 Oncorhynchus mykiss 47.1354166666667 384.0 observed 1 0
DD176504 Gadus morhua 51.5625 384.0 observed 0 0
GN111706 Marine gamma proteobacterium htcc2080 46.875 384.0 observed 1 0
HB915637 Photobacterium profundum 41.6666666666667 384.0 observed 1 0
HB924350 Photobacterium profundum 41.6666666666667 384.0 observed 1 0
HB936108 Photobacterium profundum 41.6666666666667 384.0 observed 1 0
HB938741 Photobacterium profundum 41.6666666666667 384.0 observed 1 0
HB960078 Photobacterium profundum 41.6666666666667 384.0 observed 1 0
HC969143 Photobacterium profundum 41.6666666666667 384.0 observed 1 0
HC973046 Photobacterium profundum 41.6666666666667 384.0 observed 1 0
HC981759 Photobacterium profundum 41.6666666666667 384.0 observed 1 0
HC993517 Photobacterium profundum 41.6666666666667 384.0 observed 1 0
HC996150 Photobacterium profundum 41.6666666666667 384.0 observed 1 0
HD017488 Photobacterium profundum 41.6666666666667 384.0 observed 1 0
HH765969 Psammechinus miliaris 49.4791666666667 384.0 observed 1 0
LY487795 Dendronephthya gigantea 61.71875 384.0 observed 1 0
LY519745 Dendronephthya gigantea 61.71875 384.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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