Marine_Sequences
Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT
- Sequence_accession_number
- Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
- Species_name
- Species associated with the sequence, linking to the Marine Species table. Searchable
- GC_content
- GC content of the sequence
- Sequence_length
- Length of the sequence
- Sequence_status
- Status of the sequence (e.g., confirmed, predicted)
- Is_protein_coding_sequence
- Indicates if the sequence is protein-coding (1 for yes, 0 for no)
- Is_annotated
- Indicates if the sequence has been annotated (1 for yes, 0 for no)
11 rows where Is_annotated = 0 and Sequence_length = "828.0"
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Suggested facets: GC_content
| Sequence_accession_number ▼ | Species_name | GC_content | Sequence_length | Sequence_status | Is_protein_coding_sequence | Is_annotated |
|---|---|---|---|---|---|---|
| AX109942 | Vibrio cholerae | 49.6376811594203 | 828.0 | observed | 0 | 0 |
| AX111128 | Lactococcus garvieae | 43.8405797101449 | 828.0 | observed | 0 | 0 |
| DI342078 | Uncultured marine bacterium 66a03 | 34.7826086956522 | 828.0 | observed | 1 | 0 |
| DI488592 | Uncultured marine bacterium 66a03 | 50.6038647342995 | 828.0 | observed | 1 | 0 |
| DM012466 | Anguilla japonica | 59.9033816425121 | 828.0 | observed | 0 | 0 |
| DM012591 | Anguilla japonica | 63.5265700483092 | 828.0 | observed | 0 | 0 |
| DM171005 | Geobacillus kaustophilus | 53.8647342995169 | 828.0 | observed | 1 | 0 |
| GN060310 | Geobacillus kaustophilus | 53.8647342995169 | 828.0 | observed | 1 | 0 |
| HD009032 | Vibrio parahaemolyticus rimd 2210633 | 49.5169082125604 | 828.0 | observed | 1 | 0 |
| HH766873 | Shewanella oneidensis | 46.9806763285024 | 828.0 | observed | 1 | 0 |
| LG178656 | Uncultured marine bacterium 66a03 | 50.6038647342995 | 828.0 | observed | 1 | 0 |
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CREATE TABLE Marine_Sequences (
Sequence_accession_number TEXT PRIMARY KEY,
Species_name TEXT,
GC_content TEXT,
Sequence_length TEXT,
Sequence_status TEXT,
Is_protein_coding_sequence INTEGER,
Is_annotated INTEGER,
FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
);