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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

11 rows where Is_annotated = 0, Sequence_status = "observed" and Species_name = "Balaenoptera acutorostrata scammoni"

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These facets timed out: Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_status 1

  • observed · 11 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
DI488199 Balaenoptera acutorostrata scammoni 51.2265512265512 1386.0 observed 1 0
DI488200 Balaenoptera acutorostrata scammoni 50.5715592135345 4374.0 observed 1 0
DI488201 Balaenoptera acutorostrata scammoni 47.2895040369089 867.0 observed 1 0
DI488202 Balaenoptera acutorostrata scammoni 44.1342150379623 4083.0 observed 1 0
DI488203 Balaenoptera acutorostrata scammoni 44.9062754686227 1227.0 observed 1 0
DI488208 Balaenoptera acutorostrata scammoni 58.4714548802947 1086.0 observed 1 0
DI488209 Balaenoptera acutorostrata scammoni 49.7253907900296 2367.0 observed 1 0
DI488210 Balaenoptera acutorostrata scammoni 50.5643340857788 1329.0 observed 1 0
DI488211 Balaenoptera acutorostrata scammoni 59.6832253419726 1389.0 observed 1 0
DI488213 Balaenoptera acutorostrata scammoni 48.9945155393053 1641.0 observed 1 0
DI488214 Balaenoptera acutorostrata scammoni 71.3754646840149 807.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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