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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

14 rows where Is_annotated = 0 and Species_name = "Gymnodinium catenatum"

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These facets timed out: Sequence_status, Is_protein_coding_sequence

Species_name 1

  • Gymnodinium catenatum · 14 ✖

Is_annotated 1

  • - · 14 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
HW639154 Gymnodinium catenatum 64.1584158415842 505.0 observed 1 0
HW639155 Gymnodinium catenatum 64.6825396825397 504.0 observed 1 0
HW639156 Gymnodinium catenatum 63.8888888888889 504.0 observed 1 0
HW639157 Gymnodinium catenatum 64.6825396825397 504.0 observed 1 0
HW639158 Gymnodinium catenatum 64.6825396825397 504.0 observed 1 0
HW639159 Gymnodinium catenatum 65.5480984340045 447.0 observed 1 0
HW639167 Gymnodinium catenatum 60.0596125186289 671.0 observed 0 0
JC486367 Gymnodinium catenatum 64.1584158415842 505.0 observed 1 0
JC486368 Gymnodinium catenatum 64.6825396825397 504.0 observed 1 0
JC486369 Gymnodinium catenatum 63.8888888888889 504.0 observed 1 0
JC486370 Gymnodinium catenatum 64.6825396825397 504.0 observed 1 0
JC486371 Gymnodinium catenatum 64.6825396825397 504.0 observed 1 0
JC486372 Gymnodinium catenatum 65.5480984340045 447.0 observed 1 0
JC486380 Gymnodinium catenatum 60.0596125186289 671.0 observed 0 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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