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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

223 rows where Is_annotated = 0 and Species_name = "Metridia longa"

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These facets timed out: Is_annotated, Species_name

Is_protein_coding_sequence 2

  • 1 211
  • 0 12

Sequence_status 1

  • observed 223
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
AX452573 Metridia longa 41.6666666666667 660.0 observed 1 0
AX452575 Metridia longa 44.5026178010471 573.0 observed 1 0
AX452577 Metridia longa 41.400304414003 657.0 observed 1 0
AX452579 Metridia longa 41.5525114155251 657.0 observed 1 0
AX452580 Metridia longa 41.4285714285714 630.0 observed 1 0
AX452581 Metridia longa 42.0091324200913 657.0 observed 1 0
AX452582 Metridia longa 41.8569254185692 657.0 observed 1 0
AX453004 Metridia longa 41.6666666666667 660.0 observed 1 0
AX453006 Metridia longa 44.5026178010471 573.0 observed 1 0
AX453008 Metridia longa 41.400304414003 657.0 observed 1 0
DD032278 Metridia longa 41.400304414003 657.0 observed 1 0
DL136016 Metridia longa 41.6666666666667 660.0 observed 1 0
DL136017 Metridia longa 44.5026178010471 573.0 observed 1 0
DL136018 Metridia longa 41.400304414003 657.0 observed 1 0
DL136019 Metridia longa 41.5525114155251 657.0 observed 1 0
DL136020 Metridia longa 41.4285714285714 630.0 observed 1 0
DL136021 Metridia longa 42.0091324200913 657.0 observed 1 0
DL136022 Metridia longa 41.8569254185692 657.0 observed 1 0
GM711389 Metridia longa 41.6666666666667 660.0 observed 1 0
GM711457 Metridia longa 41.6666666666667 660.0 observed 1 0
GM711459 Metridia longa 39.5437262357414 789.0 observed 0 0
HW429383 Metridia longa 32.4561403508772 570.0 observed 1 0
HW429387 Metridia longa 28.0701754385965 627.0 observed 1 0
HW429388 Metridia longa 28.5996055226824 507.0 observed 1 0
HW429389 Metridia longa 30.7070707070707 495.0 observed 1 0
HW429390 Metridia longa 30.2197802197802 546.0 observed 1 0
HW429391 Metridia longa 29.3759512937595 657.0 observed 1 0
HW429392 Metridia longa 29.3759512937595 657.0 observed 1 0
HW429393 Metridia longa 28.8990825688073 654.0 observed 1 0
HW429394 Metridia longa 29.3577981651376 654.0 observed 1 0
HW429395 Metridia longa 29.2048929663608 654.0 observed 1 0
HW429396 Metridia longa 28.8990825688073 654.0 observed 1 0
HW429404 Metridia longa 32.4561403508772 456.0 observed 1 0
HW429406 Metridia longa 29.5045045045045 444.0 observed 1 0
HW429407 Metridia longa 29.0540540540541 444.0 observed 1 0
HW429408 Metridia longa 30.6306306306306 444.0 observed 1 0
HW429409 Metridia longa 30.6306306306306 444.0 observed 1 0
HW429410 Metridia longa 30.6306306306306 444.0 observed 1 0
HW429411 Metridia longa 30.6306306306306 444.0 observed 1 0
HW429412 Metridia longa 30.4054054054054 444.0 observed 1 0
HW429413 Metridia longa 30.1801801801802 444.0 observed 1 0
HW429414 Metridia longa 30.6306306306306 444.0 observed 1 0
HW429415 Metridia longa 30.4054054054054 444.0 observed 1 0
HW429421 Metridia longa 23.5294117647059 51.0 observed 0 0
HW429422 Metridia longa 23.5294117647059 51.0 observed 0 0
HW429423 Metridia longa 25.4901960784314 51.0 observed 0 0
HW429424 Metridia longa 25.4901960784314 51.0 observed 0 0
HW429425 Metridia longa 27.4509803921569 51.0 observed 0 0
HW429426 Metridia longa 27.4509803921569 51.0 observed 0 0
HW429430 Metridia longa 30.1587301587302 63.0 observed 0 0
HW429432 Metridia longa 25.0 132.0 observed 0 0
HW429433 Metridia longa 33.3333333333333 12.0 observed 0 0
HW429434 Metridia longa 31.25 48.0 observed 0 0
HW429435 Metridia longa 31.3725490196078 51.0 observed 0 0
HW429436 Metridia longa 27.1604938271605 162.0 observed 1 0
HW429437 Metridia longa 25.7861635220126 159.0 observed 1 0
HW429438 Metridia longa 27.0440251572327 159.0 observed 1 0
HW429439 Metridia longa 27.0440251572327 159.0 observed 1 0
HW429440 Metridia longa 24.5283018867924 159.0 observed 1 0
HW429444 Metridia longa 32.6754385964912 456.0 observed 1 0
HW429446 Metridia longa 29.7297297297297 444.0 observed 1 0
HW429447 Metridia longa 29.2792792792793 444.0 observed 1 0
HW429448 Metridia longa 30.8558558558559 444.0 observed 1 0
HW429449 Metridia longa 30.8558558558559 444.0 observed 1 0
HW429450 Metridia longa 30.8558558558559 444.0 observed 1 0
HW429451 Metridia longa 30.6306306306306 444.0 observed 1 0
HW429452 Metridia longa 30.6306306306306 444.0 observed 1 0
HW429453 Metridia longa 30.4054054054054 444.0 observed 1 0
HW429454 Metridia longa 30.8558558558559 444.0 observed 1 0
HW429463 Metridia longa 32.8070175438597 570.0 observed 1 0
HW429467 Metridia longa 28.3891547049442 627.0 observed 1 0
HW429468 Metridia longa 28.9940828402367 507.0 observed 1 0
HW429469 Metridia longa 31.1111111111111 495.0 observed 1 0
HW429470 Metridia longa 30.5860805860806 546.0 observed 1 0
HW429471 Metridia longa 29.6803652968037 657.0 observed 1 0
HW429472 Metridia longa 29.6803652968037 657.0 observed 1 0
HW429473 Metridia longa 29.2048929663608 654.0 observed 1 0
HW429474 Metridia longa 29.6636085626911 654.0 observed 1 0
HW429475 Metridia longa 29.5107033639144 654.0 observed 1 0
HW429476 Metridia longa 29.2048929663608 654.0 observed 1 0
HW429485 Metridia longa 32.9824561403509 570.0 observed 1 0
HW429489 Metridia longa 28.3891547049442 627.0 observed 1 0
HW429490 Metridia longa 28.9940828402367 507.0 observed 1 0
HW429491 Metridia longa 30.9090909090909 495.0 observed 1 0
HW429492 Metridia longa 30.4029304029304 546.0 observed 1 0
HW429493 Metridia longa 29.5281582952816 657.0 observed 1 0
HW429494 Metridia longa 29.5281582952816 657.0 observed 1 0
HW429495 Metridia longa 29.2048929663608 654.0 observed 1 0
HW429496 Metridia longa 29.5107033639144 654.0 observed 1 0
HW429497 Metridia longa 29.3577981651376 654.0 observed 1 0
HW429498 Metridia longa 29.2048929663608 654.0 observed 1 0
HW429507 Metridia longa 32.4561403508772 570.0 observed 1 0
HW429511 Metridia longa 28.2296650717703 627.0 observed 1 0
HW429512 Metridia longa 28.7968441814596 507.0 observed 1 0
HW429513 Metridia longa 30.9090909090909 495.0 observed 1 0
HW429514 Metridia longa 30.4029304029304 546.0 observed 1 0
HW429515 Metridia longa 29.5281582952816 657.0 observed 1 0
HW429516 Metridia longa 29.5281582952816 657.0 observed 1 0
HW429517 Metridia longa 29.0519877675841 654.0 observed 1 0
HW429518 Metridia longa 29.5107033639144 654.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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