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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

14 rows where Is_annotated = 0 and Species_name = "Paracoccus zeaxanthinifaciens"

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated

Species_name 1

  • Paracoccus zeaxanthinifaciens · 14 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
CQ867551 Paracoccus zeaxanthinifaciens 67.8974358974359 975.0 observed 1 0
CQ867555 Paracoccus zeaxanthinifaciens 68.0 975.0 observed 1 0
CS273111 Paracoccus zeaxanthinifaciens 67.4323562570462 7096.0 observed 0 0
CS273117 Paracoccus zeaxanthinifaciens 68.7624750499002 1002.0 observed 1 0
DD413316 Paracoccus zeaxanthinifaciens 68.6626746506986 1002.0 observed 1 0
DD413326 Paracoccus zeaxanthinifaciens 68.7624750499002 1002.0 observed 1 0
DD413328 Paracoccus zeaxanthinifaciens 67.8974358974359 975.0 observed 1 0
DD413331 Paracoccus zeaxanthinifaciens 68.0 975.0 observed 1 0
DJ328613 Paracoccus zeaxanthinifaciens 71.0642040457344 1137.0 observed 1 0
DM023530 Paracoccus zeaxanthinifaciens 71.0642040457344 1137.0 observed 1 0
HB880908 Paracoccus zeaxanthinifaciens 70.9677419354839 1612.0 observed 0 0
HC931986 Paracoccus zeaxanthinifaciens 64.3153526970954 723.0 observed 1 0
HC938317 Paracoccus zeaxanthinifaciens 70.9677419354839 1612.0 observed 0 0
HH766607 Paracoccus zeaxanthinifaciens 67.6151761517615 738.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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