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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

23 rows where Is_annotated = 0 and Species_name = "Photobacterium leiognathi"

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Suggested facets: GC_content, Sequence_length

Is_protein_coding_sequence 2

  • 1 19
  • 0 4

Species_name 1

  • Photobacterium leiognathi · 23 ✖

Sequence_status 1

  • observed 23

Is_annotated 1

  • - · 23 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
DI235456 Photobacterium leiognathi 32.3567708333333 1536.0 observed 1 0
DI435506 Photobacterium leiognathi 41.4285714285714 420.0 observed 1 0
FW590129 Photobacterium leiognathi 32.3567708333333 1536.0 observed 1 0
GM962305 Photobacterium leiognathi 42.4924924924925 666.0 observed 1 0
HB898355 Photobacterium leiognathi 42.4924924924925 666.0 observed 1 0
HB901217 Photobacterium leiognathi 42.4924924924925 666.0 observed 1 0
HB909328 Photobacterium leiognathi 42.4924924924925 666.0 observed 1 0
HB920431 Photobacterium leiognathi 42.4924924924925 666.0 observed 1 0
HB930071 Photobacterium leiognathi 42.4924924924925 666.0 observed 1 0
HB947225 Photobacterium leiognathi 42.4924924924925 666.0 observed 1 0
HC955764 Photobacterium leiognathi 42.4924924924925 666.0 observed 1 0
HC958626 Photobacterium leiognathi 42.4924924924925 666.0 observed 1 0
HC966737 Photobacterium leiognathi 42.4924924924925 666.0 observed 1 0
HC977840 Photobacterium leiognathi 42.4924924924925 666.0 observed 1 0
HC987480 Photobacterium leiognathi 42.4924924924925 666.0 observed 1 0
HD004635 Photobacterium leiognathi 42.4924924924925 666.0 observed 1 0
HW313967 Photobacterium leiognathi 35.5314827352742 7385.0 observed 0 0
HW313976 Photobacterium leiognathi 34.7517730496454 705.0 observed 1 0
HW314006 Photobacterium leiognathi 40.1719197707736 3490.0 observed 0 0
HW314016 Photobacterium leiognathi 40.1719197707736 3490.0 observed 0 0
HW314026 Photobacterium leiognathi 37.1315106155491 6547.0 observed 0 0
OF197341 Photobacterium leiognathi 47.3895582329317 1494.0 observed 1 0
OF197343 Photobacterium leiognathi 47.4120082815735 1449.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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