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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

130 rows where Is_annotated = 0 and Species_name = "Thermococcus kodakarensis"

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated

Species_name 1

  • Thermococcus kodakarensis · 130 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
BD175552 Thermococcus kodakarensis 50.6364657431674 5342.0 observed 0 0
BD175553 Thermococcus kodakarensis 52.9032258064516 2325.0 observed 1 0
DD136219 Thermococcus kodakarensis 52.2607385079126 2654.0 observed 0 0
DD136220 Thermococcus kodakarensis 52.9032258064516 2325.0 observed 1 0
DD360332 Thermococcus kodakarensis 52.8172043010753 2325.0 observed 1 0
DD432197 Thermococcus kodakarensis 52.8172043010753 2325.0 observed 1 0
DD432198 Thermococcus kodakarensis 52.8172043010753 2325.0 observed 1 0
DI402969 Thermococcus kodakarensis 57.3839662447257 948.0 observed 1 0
DJ432306 Thermococcus kodakarensis 52.2760646108664 681.0 observed 1 0
DL075173 Thermococcus kodakarensis 52.9032258064516 2325.0 observed 1 0
FB807810 Thermococcus kodakarensis 54.2904290429043 606.0 observed 1 0
FB835459 Thermococcus kodakarensis 54.2904290429043 606.0 observed 1 0
FB842860 Thermococcus kodakarensis 54.2904290429043 606.0 observed 1 0
FB863521 Thermococcus kodakarensis 54.2904290429043 606.0 observed 1 0
FB883098 Thermococcus kodakarensis 54.2904290429043 606.0 observed 1 0
FW308749 Thermococcus kodakarensis 57.2022880915237 1923.0 observed 1 0
FW309290 Thermococcus kodakarensis 55.6694426649584 1561.0 observed 0 0
GN105309 Thermococcus kodakarensis 55.4605887939221 1053.0 observed 1 0
GN111292 Thermococcus kodakarensis 54.8985507246377 1725.0 observed 1 0
HB663752 Thermococcus kodakarensis 54.2904290429043 606.0 observed 1 0
HB677869 Thermococcus kodakarensis 54.2904290429043 606.0 observed 1 0
HB705518 Thermococcus kodakarensis 54.2904290429043 606.0 observed 1 0
HB712919 Thermococcus kodakarensis 54.2904290429043 606.0 observed 1 0
HB733580 Thermococcus kodakarensis 54.2904290429043 606.0 observed 1 0
HB753157 Thermococcus kodakarensis 54.2904290429043 606.0 observed 1 0
HB918656 Thermococcus kodakarensis 55.4605887939221 1053.0 observed 1 0
HB919028 Thermococcus kodakarensis 51.9246519246519 1221.0 observed 1 0
HB921717 Thermococcus kodakarensis 56.8273092369478 498.0 observed 1 0
HB926272 Thermococcus kodakarensis 51.9246519246519 1221.0 observed 1 0
HB930080 Thermococcus kodakarensis 53.0894308943089 1230.0 observed 1 0
HB930336 Thermococcus kodakarensis 56.0327198364008 978.0 observed 1 0
HB931355 Thermococcus kodakarensis 56.7354965585054 1017.0 observed 1 0
HB943132 Thermococcus kodakarensis 51.9246519246519 1221.0 observed 1 0
HB945897 Thermococcus kodakarensis 54.46735395189 582.0 observed 1 0
HB945899 Thermococcus kodakarensis 57.6271186440678 531.0 observed 1 0
HB947415 Thermococcus kodakarensis 56.0327198364008 978.0 observed 1 0
HB950422 Thermococcus kodakarensis 53.7483266398929 1494.0 observed 1 0
HB950762 Thermococcus kodakarensis 53.8821954484605 1494.0 observed 1 0
HB950836 Thermococcus kodakarensis 56.8273092369478 498.0 observed 1 0
HB952298 Thermococcus kodakarensis 52.4488825487399 2103.0 observed 1 0
HB952300 Thermococcus kodakarensis 33.5745878568557 2487.0 observed 1 0
HB954382 Thermococcus kodakarensis 51.9246519246519 1221.0 observed 1 0
HB960789 Thermococcus kodakarensis 56.5683646112601 1119.0 observed 1 0
HB962970 Thermococcus kodakarensis 50.5933117583603 927.0 observed 1 0
HB962972 Thermococcus kodakarensis 53.1019978969506 951.0 observed 1 0
HB965098 Thermococcus kodakarensis 53.0894308943089 1230.0 observed 1 0
HB968605 Thermococcus kodakarensis 55.2046783625731 855.0 observed 1 0
HC897308 Thermococcus kodakarensis 53.3054975643702 1437.0 observed 1 0
HC899122 Thermococcus kodakarensis 58.1413210445468 1302.0 observed 1 0
HC901204 Thermococcus kodakarensis 53.3054975643702 1437.0 observed 1 0
HC938473 Thermococcus kodakarensis 56.4922480620155 1032.0 observed 1 0
HC941324 Thermococcus kodakarensis 53.3054975643702 1437.0 observed 1 0
HC961674 Thermococcus kodakarensis 56.5683646112601 1119.0 observed 1 0
HC962413 Thermococcus kodakarensis 56.8273092369478 498.0 observed 1 0
HC963205 Thermococcus kodakarensis 51.9246519246519 1221.0 observed 1 0
HC970000 Thermococcus kodakarensis 53.0894308943089 1230.0 observed 1 0
HC970302 Thermococcus kodakarensis 56.0327198364008 978.0 observed 1 0
HC970748 Thermococcus kodakarensis 56.7354965585054 1017.0 observed 1 0
HC976065 Thermococcus kodakarensis 55.4605887939221 1053.0 observed 1 0
HC976437 Thermococcus kodakarensis 51.9246519246519 1221.0 observed 1 0
HC977855 Thermococcus kodakarensis 53.4031413612565 1146.0 observed 1 0
HC979126 Thermococcus kodakarensis 56.8273092369478 498.0 observed 1 0
HC983681 Thermococcus kodakarensis 51.9246519246519 1221.0 observed 1 0
HC986908 Thermococcus kodakarensis 54.46735395189 582.0 observed 1 0
HC986910 Thermococcus kodakarensis 57.6271186440678 531.0 observed 1 0
HC987489 Thermococcus kodakarensis 53.0894308943089 1230.0 observed 1 0
HC987745 Thermococcus kodakarensis 56.0327198364008 978.0 observed 1 0
HC988764 Thermococcus kodakarensis 56.7354965585054 1017.0 observed 1 0
HC989658 Thermococcus kodakarensis 50.5933117583603 927.0 observed 1 0
HC989660 Thermococcus kodakarensis 53.1019978969506 951.0 observed 1 0
HC992882 Thermococcus kodakarensis 52.4488825487399 2103.0 observed 1 0
HC992884 Thermococcus kodakarensis 33.5745878568557 2487.0 observed 1 0
HC994152 Thermococcus kodakarensis 53.7483266398929 1494.0 observed 1 0
HC994492 Thermococcus kodakarensis 53.8821954484605 1494.0 observed 1 0
HD000542 Thermococcus kodakarensis 51.9246519246519 1221.0 observed 1 0
HD003307 Thermococcus kodakarensis 54.46735395189 582.0 observed 1 0
HD003309 Thermococcus kodakarensis 57.6271186440678 531.0 observed 1 0
HD004825 Thermococcus kodakarensis 56.0327198364008 978.0 observed 1 0
HD007832 Thermococcus kodakarensis 53.7483266398929 1494.0 observed 1 0
HD008172 Thermococcus kodakarensis 53.8821954484605 1494.0 observed 1 0
HD008246 Thermococcus kodakarensis 56.8273092369478 498.0 observed 1 0
HD009708 Thermococcus kodakarensis 52.4488825487399 2103.0 observed 1 0
HD009710 Thermococcus kodakarensis 33.5745878568557 2487.0 observed 1 0
HD011792 Thermococcus kodakarensis 51.9246519246519 1221.0 observed 1 0
HD018199 Thermococcus kodakarensis 56.5683646112601 1119.0 observed 1 0
HD020380 Thermococcus kodakarensis 50.5933117583603 927.0 observed 1 0
HD020382 Thermococcus kodakarensis 53.1019978969506 951.0 observed 1 0
HD022508 Thermococcus kodakarensis 53.0894308943089 1230.0 observed 1 0
HD026015 Thermococcus kodakarensis 55.2046783625731 855.0 observed 1 0
HH765387 Thermococcus kodakarensis 56.5864833906071 873.0 observed 1 0
HH766851 Thermococcus kodakarensis 50.8176100628931 795.0 observed 1 0
HH767908 Thermococcus kodakarensis 54.5454545454545 231.0 observed 1 0
HW528392 Thermococcus kodakarensis 52.9032258064516 2325.0 observed 1 0
HW528433 Thermococcus kodakarensis 52.9032258064516 2325.0 observed 1 0
HW528474 Thermococcus kodakarensis 52.9032258064516 2325.0 observed 1 0
HW816684 Thermococcus kodakarensis 52.9032258064516 2325.0 observed 1 0
HW816877 Thermococcus kodakarensis 52.9032258064516 2325.0 observed 1 0
HW816879 Thermococcus kodakarensis 55.0666666666667 750.0 observed 1 0
HW816895 Thermococcus kodakarensis 52.9032258064516 2325.0 observed 1 0
HW816905 Thermococcus kodakarensis 55.0666666666667 750.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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