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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

16 rows where Is_annotated = 0 and Species_name = "Thunnus thynnus thynnus"

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These facets timed out: Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_status 1

  • observed 16
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
LQ939389 Thunnus thynnus thynnus 44.7619047619048 315.0 observed 1 0
LQ939391 Thunnus thynnus thynnus 23.5294117647059 17.0 observed 0 0
LQ939392 Thunnus thynnus thynnus 40.0 15.0 observed 0 0
LQ939393 Thunnus thynnus thynnus 54.1666666666667 24.0 observed 0 0
LQ939394 Thunnus thynnus thynnus 68.4210526315789 19.0 observed 0 0
LQ939395 Thunnus thynnus thynnus 52.0 50.0 observed 0 0
LQ939396 Thunnus thynnus thynnus 53.3333333333333 30.0 observed 0 0
LQ939397 Thunnus thynnus thynnus 41.3793103448276 29.0 observed 0 0
LQ939398 Thunnus thynnus thynnus 41.1764705882353 17.0 observed 0 0
LQ939399 Thunnus thynnus thynnus 47.6190476190476 21.0 observed 0 0
LQ939400 Thunnus thynnus thynnus 53.3333333333333 30.0 observed 0 0
LQ939401 Thunnus thynnus thynnus 51.6129032258064 31.0 observed 0 0
LQ939402 Thunnus thynnus thynnus 42.8571428571428 49.0 observed 0 0
LQ939403 Thunnus thynnus thynnus 46.1904761904762 630.0 observed 0 0
LQ939404 Thunnus thynnus thynnus 53.3807829181495 562.0 observed 0 0
LQ939405 Thunnus thynnus thynnus 54.2536115569823 623.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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