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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

16 rows where Is_annotated = 0 and Species_name = "Vibrio harveyi"

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
AX321424 Vibrio harveyi 45.8574181117534 519.0 observed 1 0
AX338554 Vibrio harveyi 45.4159380464652 4003.0 observed 0 0
AX338556 Vibrio harveyi 48.3193277310924 476.0 observed 1 0
BD394898 Vibrio harveyi 45.8574181117534 519.0 observed 1 0
BD410257 Vibrio harveyi 45.8574181117534 519.0 observed 1 0
GM962465 Vibrio harveyi 46.4465841357176 2181.0 observed 1 0
HB961778 Vibrio harveyi 47.2108843537415 735.0 observed 1 0
HC913289 Vibrio harveyi 48.1570512820513 1248.0 observed 1 0
HC931842 Vibrio harveyi 47.2108843537415 735.0 observed 1 0
HC955528 Vibrio harveyi 38.8888888888889 288.0 observed 1 0
HD019188 Vibrio harveyi 47.2108843537415 735.0 observed 1 0
HV192785 Vibrio harveyi 46.1386138613861 1515.0 observed 1 0
HW313964 Vibrio harveyi 42.6708398539384 9585.0 observed 0 0
HW314012 Vibrio harveyi 42.2649140546006 989.0 observed 0 0
LP126929 Vibrio harveyi 41.5247364152474 3699.0 observed 1 0
OF197334 Vibrio harveyi 46.6841186736475 1146.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
Powered by Datasette · Queries took 6400.58ms · Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT