Marine_Sequences
Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT
- Sequence_accession_number
- Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
- Species_name
- Species associated with the sequence, linking to the Marine Species table. Searchable
- GC_content
- GC content of the sequence
- Sequence_length
- Length of the sequence
- Sequence_status
- Status of the sequence (e.g., confirmed, predicted)
- Is_protein_coding_sequence
- Indicates if the sequence is protein-coding (1 for yes, 0 for no)
- Is_annotated
- Indicates if the sequence has been annotated (1 for yes, 0 for no)
71,148 rows where Is_annotated = 1 and Is_protein_coding_sequence = 1
This data as json, CSV (advanced)
Species_name >30
- Odobenus rosmarus divergens 35,250
- Trichechus manatus latirostris 11,908
- Physeter macrocephalus 7,462
- Anabaena sp. ybs01 588
- Rhizophora mucronata 491
- Thermococcus sp. 2319x1 400
- Magnetococcus marinus 325
- Thermococcus sp. gr7 292
- Aquifex aeolicus 259
- Vibrio cholerae 239
- Vibrio vulnificus 239
- Vibrio cholerae serotype 237
- Prochlorococcus marinus 231
- Synechococcus sp. 214
- Pyrococcus furiosus 200
- Vibrio parahaemolyticus 186
- Photobacterium profundum ss9 163
- Shewanella oneidensis mr-1 159
- Thermotoga maritima 159
- Saccharophagus degradans 2-40 156
- Vibrio parahaemolyticus rimd 2210633 154
- Photobacterium profundum 152
- Methanosarcina mazei 147
- Shewanella oneidensis 147
- Ruegeria pomeroyi dss-3 145
- Vibrio vulnificus yj016 129
- Desulfotalea psychrophila lsv54 118
- Ruegeria sp. tm1040 117
- Oceanobacillus iheyensis 115
- Colwellia psychrerythraea 34h 113
- …
Is_protein_coding_sequence 1
- 1 · 71,148 ✖
Is_annotated 1
- 1 · 71,148 ✖
| Sequence_accession_number ▼ | Species_name | GC_content | Sequence_length | Sequence_status | Is_protein_coding_sequence | Is_annotated |
|---|---|---|---|---|---|---|
| A01472 | Physeter macrocephalus | 51.8264840182648 | 438.0 | predicted | 1 | 1 |
| A01473 | Physeter macrocephalus | 50.9677419354839 | 465.0 | predicted | 1 | 1 |
| A01474 | Trichechus manatus latirostris | 55.4838709677419 | 465.0 | predicted | 1 | 1 |
| A04570 | Odobenus rosmarus divergens | 53.8095238095238 | 210.0 | predicted | 1 | 1 |
| A04571 | Odobenus rosmarus divergens | 53.8095238095238 | 210.0 | predicted | 1 | 1 |
| A06457 | Odobenus rosmarus divergens | 50.2347417840376 | 213.0 | predicted | 1 | 1 |
| A07924 | Marinobacter vinifirmus | 61.6666666666667 | 840.0 | predicted | 1 | 1 |
| A11249 | Odobenus rosmarus divergens | 53.8095238095238 | 210.0 | predicted | 1 | 1 |
| A11250 | Odobenus rosmarus divergens | 53.8095238095238 | 210.0 | predicted | 1 | 1 |
| A13590 | Odobenus rosmarus divergens | 52.0 | 150.0 | predicted | 1 | 1 |
| A14656 | Odobenus rosmarus divergens | 58.4216725559482 | 849.0 | predicted | 1 | 1 |
| A42847 | Psychrobacter maritimus | 49.3612078977933 | 861.0 | predicted | 1 | 1 |
| A43637 | Odobenus rosmarus divergens | 60.9934258582907 | 2738.0 | predicted | 1 | 1 |
| A43647 | Odobenus rosmarus divergens | 51.1467054969057 | 2747.0 | predicted | 1 | 1 |
| A43649 | Odobenus rosmarus divergens | 51.0838150289017 | 2768.0 | predicted | 1 | 1 |
| A47120 | Odobenus rosmarus divergens | 42.2149122807018 | 912.0 | predicted | 1 | 1 |
| A47122 | Trichechus manatus latirostris | 40.084388185654 | 1185.0 | predicted | 1 | 1 |
| A49949 | Psychrobacter maritimus | 49.3612078977933 | 861.0 | predicted | 1 | 1 |
| A52569 | Physeter macrocephalus | 55.4448398576512 | 1405.0 | predicted | 1 | 1 |
| A52706 | Odobenus rosmarus divergens | 51.1827956989247 | 465.0 | predicted | 1 | 1 |
| A52707 | Odobenus rosmarus divergens | 50.9677419354839 | 465.0 | predicted | 1 | 1 |
| A52708 | Odobenus rosmarus divergens | 51.1827956989247 | 465.0 | predicted | 1 | 1 |
| A52709 | Odobenus rosmarus divergens | 51.1827956989247 | 465.0 | predicted | 1 | 1 |
| A52710 | Odobenus rosmarus divergens | 51.1827956989247 | 465.0 | predicted | 1 | 1 |
| A52711 | Odobenus rosmarus divergens | 50.9677419354839 | 465.0 | predicted | 1 | 1 |
| A52712 | Odobenus rosmarus divergens | 51.3978494623656 | 465.0 | predicted | 1 | 1 |
| A52713 | Odobenus rosmarus divergens | 51.6129032258064 | 465.0 | predicted | 1 | 1 |
| A52714 | Odobenus rosmarus divergens | 51.1827956989247 | 465.0 | predicted | 1 | 1 |
| A52715 | Odobenus rosmarus divergens | 51.1827956989247 | 465.0 | predicted | 1 | 1 |
| A52716 | Odobenus rosmarus divergens | 50.752688172043 | 465.0 | predicted | 1 | 1 |
| A52717 | Odobenus rosmarus divergens | 51.3978494623656 | 465.0 | predicted | 1 | 1 |
| A52718 | Odobenus rosmarus divergens | 51.1827956989247 | 465.0 | predicted | 1 | 1 |
| A52719 | Odobenus rosmarus divergens | 50.9677419354839 | 465.0 | predicted | 1 | 1 |
| A52720 | Odobenus rosmarus divergens | 51.1827956989247 | 465.0 | predicted | 1 | 1 |
| A52721 | Odobenus rosmarus divergens | 51.6129032258064 | 465.0 | predicted | 1 | 1 |
| A52722 | Odobenus rosmarus divergens | 51.3978494623656 | 465.0 | predicted | 1 | 1 |
| A63601 | Odobenus rosmarus divergens | 45.3015427769986 | 713.0 | predicted | 1 | 1 |
| A64392 | Physeter macrocephalus | 52.4305555555556 | 576.0 | predicted | 1 | 1 |
| A75936 | Odobenus rosmarus divergens | 39.3202369816027 | 3207.0 | predicted | 1 | 1 |
| A75941 | Odobenus rosmarus divergens | 42.3772609819121 | 387.0 | predicted | 1 | 1 |
| A77048 | Odobenus rosmarus divergens | 53.5682023486902 | 1107.0 | predicted | 1 | 1 |
| A78983 | Physeter macrocephalus | 37.8891419893698 | 1317.0 | predicted | 1 | 1 |
| A78984 | Physeter macrocephalus | 39.0673575129534 | 965.0 | predicted | 1 | 1 |
| A79049 | Odobenus rosmarus divergens | 57.7333333333333 | 1500.0 | predicted | 1 | 1 |
| A81885 | Actinia equina | 47.4137931034483 | 696.0 | observed | 1 | 1 |
| A83743 | Thermococcus fumicolans | 49.2716366752356 | 1167.0 | predicted | 1 | 1 |
| A91096 | Odobenus rosmarus divergens | 52.7633851468048 | 1158.0 | predicted | 1 | 1 |
| A91755 | Odobenus rosmarus divergens | 55.999180999181 | 4884.0 | predicted | 1 | 1 |
| A92242 | Physeter macrocephalus | 53.2879818594104 | 441.0 | predicted | 1 | 1 |
| A92244 | Physeter macrocephalus | 52.5305410122164 | 573.0 | predicted | 1 | 1 |
| A92246 | Physeter macrocephalus | 52.093023255814 | 645.0 | predicted | 1 | 1 |
| A94687 | Odobenus rosmarus divergens | 54.4494720965309 | 1326.0 | predicted | 1 | 1 |
| A94688 | Odobenus rosmarus divergens | 56.4876957494407 | 1788.0 | predicted | 1 | 1 |
| A95103 | Methanosarcina mazei | 49.2450638792102 | 861.0 | predicted | 1 | 1 |
| A98087 | Physeter macrocephalus | 51.1945392491468 | 2344.0 | predicted | 1 | 1 |
| A98523 | Odobenus rosmarus divergens | 59.8765432098765 | 162.0 | predicted | 1 | 1 |
| AR213253 | Trichechus manatus latirostris | 55.5913978494624 | 930.0 | predicted | 1 | 1 |
| AR213554 | Trichechus manatus latirostris | 44.6428571428571 | 840.0 | predicted | 1 | 1 |
| AR214127 | Odobenus rosmarus divergens | 62.2770919067215 | 729.0 | predicted | 1 | 1 |
| AR214521 | Odobenus rosmarus divergens | 44.2073170731707 | 984.0 | predicted | 1 | 1 |
| AR215643 | Odobenus rosmarus divergens | 48.013816925734 | 579.0 | predicted | 1 | 1 |
| AR216316 | Odobenus rosmarus divergens | 55.6473829201102 | 363.0 | predicted | 1 | 1 |
| AR216960 | Odobenus rosmarus divergens | 68.5714285714286 | 245.0 | predicted | 1 | 1 |
| AR217610 | Odobenus rosmarus divergens | 49.448123620309 | 453.0 | predicted | 1 | 1 |
| AR217611 | Odobenus rosmarus divergens | 49.448123620309 | 453.0 | predicted | 1 | 1 |
| AR217612 | Odobenus rosmarus divergens | 49.2273730684327 | 453.0 | predicted | 1 | 1 |
| AR217613 | Odobenus rosmarus divergens | 49.0066225165563 | 453.0 | predicted | 1 | 1 |
| AR219827 | Trichechus manatus latirostris | 54.4821583986075 | 1149.0 | predicted | 1 | 1 |
| AR220086 | Trichechus manatus latirostris | 58.2403965303594 | 807.0 | predicted | 1 | 1 |
| AR220260 | Odobenus rosmarus divergens | 53.353057199211 | 1014.0 | predicted | 1 | 1 |
| AR220684 | Odobenus rosmarus divergens | 53.1024531024531 | 1386.0 | predicted | 1 | 1 |
| AR220685 | Odobenus rosmarus divergens | 52.6112185686654 | 1551.0 | predicted | 1 | 1 |
| AR220687 | Odobenus rosmarus divergens | 47.2988505747126 | 1740.0 | predicted | 1 | 1 |
| AR221147 | Odobenus rosmarus divergens | 60.0081449806557 | 4911.0 | predicted | 1 | 1 |
| AR222058 | Thermococcus eurythermalis | 56.3402889245586 | 1869.0 | predicted | 1 | 1 |
| AR222659 | Odobenus rosmarus divergens | 50.9174311926606 | 218.0 | predicted | 1 | 1 |
| AR223878 | Odobenus rosmarus divergens | 39.2516227567774 | 2619.0 | predicted | 1 | 1 |
| AR224786 | Physeter macrocephalus | 48.1900452488688 | 442.0 | predicted | 1 | 1 |
| AR225461 | Trichechus manatus latirostris | 40.2159244264507 | 741.0 | predicted | 1 | 1 |
| AR226361 | Odobenus rosmarus divergens | 46.4646464646465 | 198.0 | predicted | 1 | 1 |
| AR226364 | Trichechus manatus latirostris | 44.7619047619048 | 210.0 | predicted | 1 | 1 |
| AR226516 | Trichechus manatus latirostris | 64.7058823529412 | 1190.0 | predicted | 1 | 1 |
| AR226522 | Odobenus rosmarus divergens | 67.1428571428571 | 1190.0 | predicted | 1 | 1 |
| AR227683 | Odobenus rosmarus divergens | 65.0224215246637 | 223.0 | predicted | 1 | 1 |
| AR227954 | Odobenus rosmarus divergens | 50.7177033492823 | 627.0 | predicted | 1 | 1 |
| AR227958 | Odobenus rosmarus divergens | 50.7177033492823 | 627.0 | predicted | 1 | 1 |
| AR227959 | Odobenus rosmarus divergens | 49.2822966507177 | 627.0 | predicted | 1 | 1 |
| AR229607 | Hypnos monopterygius | 39.1111111111111 | 1350.0 | predicted | 1 | 1 |
| AR232450 | Oceanobacter sp | 60.9375 | 192.0 | predicted | 1 | 1 |
| AR236278 | Odobenus rosmarus divergens | 53.822629969419 | 327.0 | predicted | 1 | 1 |
| AR236598 | Physeter macrocephalus | 55.7058619493583 | 2883.0 | predicted | 1 | 1 |
| AR236600 | Physeter macrocephalus | 56.0984060984061 | 2886.0 | predicted | 1 | 1 |
| AR236602 | Odobenus rosmarus divergens | 57.9274611398964 | 2895.0 | predicted | 1 | 1 |
| AR236616 | Physeter macrocephalus | 55.7407407407407 | 2700.0 | predicted | 1 | 1 |
| AR236619 | Physeter macrocephalus | 55.3927095077039 | 2661.0 | predicted | 1 | 1 |
| AR237430 | Trichechus manatus latirostris | 55.0 | 1260.0 | predicted | 1 | 1 |
| AR238162 | Trichechus manatus latirostris | 59.7058823529412 | 340.0 | predicted | 1 | 1 |
| AR238367 | Physeter macrocephalus | 56.0371517027864 | 323.0 | predicted | 1 | 1 |
| AR241602 | Odobenus rosmarus divergens | 39.344262295082 | 244.0 | predicted | 1 | 1 |
| AR241625 | Infectious salmon anemia virus | 47.2177201512696 | 1851.0 | predicted | 1 | 1 |
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CREATE TABLE Marine_Sequences (
Sequence_accession_number TEXT PRIMARY KEY,
Species_name TEXT,
GC_content TEXT,
Sequence_length TEXT,
Sequence_status TEXT,
Is_protein_coding_sequence INTEGER,
Is_annotated INTEGER,
FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
);