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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

17 rows where Is_annotated = 1, Is_protein_coding_sequence = 1 and Species_name = "Dosidicus gigas"

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Suggested facets: GC_content

Species_name 1

  • Dosidicus gigas · 17 ✖

Sequence_status 1

  • observed 17

Is_protein_coding_sequence 1

  • 1 · 17 ✖

Is_annotated 1

  • 1 · 17 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
JE831343 Dosidicus gigas 51.2418300653595 765.0 observed 1 1
JE831344 Dosidicus gigas 51.261620185923 753.0 observed 1 1
JE831345 Dosidicus gigas 51.1111111111111 765.0 observed 1 1
JE831346 Dosidicus gigas 50.314465408805 636.0 observed 1 1
JE831348 Dosidicus gigas 51.5075376884422 1194.0 observed 1 1
JE831358 Dosidicus gigas 48.12734082397 534.0 observed 1 1
JE831359 Dosidicus gigas 49.5384615384615 975.0 observed 1 1
JE831362 Dosidicus gigas 48.1684981684982 546.0 observed 1 1
JE831363 Dosidicus gigas 52.8942115768463 501.0 observed 1 1
JE831364 Dosidicus gigas 50.3311258278146 453.0 observed 1 1
JE831365 Dosidicus gigas 49.8148148148148 540.0 observed 1 1
JE831366 Dosidicus gigas 50.5524861878453 1086.0 observed 1 1
JE831367 Dosidicus gigas 51.4102564102564 780.0 observed 1 1
JE831368 Dosidicus gigas 51.2418300653595 765.0 observed 1 1
JE831369 Dosidicus gigas 51.0666666666667 750.0 observed 1 1
JE831371 Dosidicus gigas 51.6363636363636 825.0 observed 1 1
JE831373 Dosidicus gigas 48.2517482517483 429.0 observed 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
Powered by Datasette · Queries took 1492.06ms · Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT