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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

12 rows where Is_annotated = 1, Is_protein_coding_sequence = 1 and Species_name = "Rhodothermus marinus"

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These facets timed out: Sequence_status, Is_annotated, Species_name

Is_protein_coding_sequence 1

  • 1 · 12 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
AX339682 Rhodothermus marinus 65.5216284987277 786.0 observed 1 1
CS057393 Rhodothermus marinus 67.4937965260546 1209.0 observed 1 1
HV700312 Rhodothermus marinus 67.4825174825175 1716.0 observed 1 1
HV760968 Rhodothermus marinus 62.593783494105 1866.0 observed 1 1
HV766104 Rhodothermus marinus 68.6844229217111 1239.0 observed 1 1
LQ000523 Rhodothermus marinus 64.8382559774965 1422.0 observed 1 1
LQ000524 Rhodothermus marinus 54.4463568559954 1743.0 observed 1 1
LQ000525 Rhodothermus marinus 54.3967280163599 1467.0 observed 1 1
LQ000526 Rhodothermus marinus 64.327485380117 2565.0 observed 1 1
LQ000527 Rhodothermus marinus 65.0046168051708 2166.0 observed 1 1
LQ059784 Rhodothermus marinus 66.2297128589263 1602.0 observed 1 1
LQ105674 Rhodothermus marinus 48.224043715847 732.0 observed 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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