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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

7 rows where Is_annotated = 1, Is_protein_coding_sequence = 1 and Species_name = "Salmo salar"

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These facets timed out: Species_name

Sequence_status 1

  • observed 7

Is_protein_coding_sequence 1

  • 1 · 7 ✖

Is_annotated 1

  • 1 · 7 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
CS188256 Salmo salar 43.4156378600823 486.0 observed 1 1
CS247045 Salmo salar 52.8205128205128 1365.0 observed 1 1
HV742841 Salmo salar 51.6339869281046 765.0 observed 1 1
HW241717 Salmo salar 52.7458492975734 783.0 observed 1 1
HW241718 Salmo salar 51.6369047619048 672.0 observed 1 1
LQ945989 Salmo salar 45.3887884267631 553.0 observed 1 1
LQ980091 Salmo salar 60.2777777777778 720.0 observed 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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