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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

66 rows where Is_annotated = 1, Is_protein_coding_sequence = 1 and Species_name = "Synechococcus elongatus pcc 7942 = fachb-805"

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These facets timed out: Species_name

Sequence_status 1

  • observed 66

Is_protein_coding_sequence 1

  • 1 · 66 ✖

Is_annotated 1

  • 1 · 66 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
CS064280 Synechococcus elongatus pcc 7942 = fachb-805 48.5148514851485 303.0 observed 1 1
CS064281 Synechococcus elongatus pcc 7942 = fachb-805 49.6212121212121 264.0 observed 1 1
DJ066789 Synechococcus elongatus pcc 7942 = fachb-805 55.3166069295102 837.0 observed 1 1
FB708256 Synechococcus elongatus pcc 7942 = fachb-805 58.1333333333333 750.0 observed 1 1
FB764110 Synechococcus elongatus pcc 7942 = fachb-805 56.7864271457086 1002.0 observed 1 1
FB784893 Synechococcus elongatus pcc 7942 = fachb-805 59.0146750524109 954.0 observed 1 1
FB805480 Synechococcus elongatus pcc 7942 = fachb-805 57.542908762421 1107.0 observed 1 1
FB832206 Synechococcus elongatus pcc 7942 = fachb-805 56.1056105610561 1515.0 observed 1 1
FB845120 Synechococcus elongatus pcc 7942 = fachb-805 57.1980676328502 1035.0 observed 1 1
FB903203 Synechococcus elongatus pcc 7942 = fachb-805 56.8817204301075 1860.0 observed 1 1
GM954789 Synechococcus elongatus pcc 7942 = fachb-805 56.8075117370892 1065.0 observed 1 1
GM959728 Synechococcus elongatus pcc 7942 = fachb-805 55.5555555555556 2196.0 observed 1 1
GN098031 Synechococcus elongatus pcc 7942 = fachb-805 58.4206848357792 2862.0 observed 1 1
GN098900 Synechococcus elongatus pcc 7942 = fachb-805 59.6938775510204 1176.0 observed 1 1
GN108622 Synechococcus elongatus pcc 7942 = fachb-805 58.8938714499253 669.0 observed 1 1
GN109836 Synechococcus elongatus pcc 7942 = fachb-805 58.974358974359 702.0 observed 1 1
GN117412 Synechococcus elongatus pcc 7942 = fachb-805 54.5530492898914 1197.0 observed 1 1
GN117414 Synechococcus elongatus pcc 7942 = fachb-805 59.8148148148148 1080.0 observed 1 1
GN118968 Synechococcus elongatus pcc 7942 = fachb-805 55.2724699221515 1413.0 observed 1 1
GN120847 Synechococcus elongatus pcc 7942 = fachb-805 55.4069119286511 1794.0 observed 1 1
GN124731 Synechococcus elongatus pcc 7942 = fachb-805 58.2389937106918 795.0 observed 1 1
HB439444 Synechococcus elongatus pcc 7942 = fachb-805 58.9496248660236 933.0 observed 1 1
HB812632 Synechococcus elongatus pcc 7942 = fachb-805 58.5903083700441 1362.0 observed 1 1
HB897728 Synechococcus elongatus pcc 7942 = fachb-805 57.0336391437309 654.0 observed 1 1
HB899861 Synechococcus elongatus pcc 7942 = fachb-805 57.4257425742574 1515.0 observed 1 1
HB902006 Synechococcus elongatus pcc 7942 = fachb-805 54.786036036036 1776.0 observed 1 1
HB904593 Synechococcus elongatus pcc 7942 = fachb-805 57.9744816586922 1254.0 observed 1 1
HB905122 Synechococcus elongatus pcc 7942 = fachb-805 55.3990610328638 426.0 observed 1 1
HB912729 Synechococcus elongatus pcc 7942 = fachb-805 57.5174825174825 1716.0 observed 1 1
HB912731 Synechococcus elongatus pcc 7942 = fachb-805 53.960113960114 1755.0 observed 1 1
HB917569 Synechococcus elongatus pcc 7942 = fachb-805 59.2332865825152 2139.0 observed 1 1
HB917571 Synechococcus elongatus pcc 7942 = fachb-805 59.5591542959964 2223.0 observed 1 1
HB934141 Synechococcus elongatus pcc 7942 = fachb-805 56.0344827586207 696.0 observed 1 1
HB941116 Synechococcus elongatus pcc 7942 = fachb-805 55.9562841530055 915.0 observed 1 1
HB946172 Synechococcus elongatus pcc 7942 = fachb-805 55.7025834908633 1587.0 observed 1 1
HB957750 Synechococcus elongatus pcc 7942 = fachb-805 56.1357702349869 1149.0 observed 1 1
HB959695 Synechococcus elongatus pcc 7942 = fachb-805 55.8876811594203 1104.0 observed 1 1
HB973277 Synechococcus elongatus pcc 7942 = fachb-805 55.2592592592593 675.0 observed 1 1
HC495547 Synechococcus elongatus pcc 7942 = fachb-805 56.8686868686869 990.0 observed 1 1
HC495549 Synechococcus elongatus pcc 7942 = fachb-805 57.0151921358356 1119.0 observed 1 1
HC495551 Synechococcus elongatus pcc 7942 = fachb-805 55.5223880597015 1005.0 observed 1 1
HC496168 Synechococcus elongatus pcc 7942 = fachb-805 59.1836734693878 882.0 observed 1 1
HC745762 Synechococcus elongatus pcc 7942 = fachb-805 56.3758389261745 894.0 observed 1 1
HC745764 Synechococcus elongatus pcc 7942 = fachb-805 59.0811965811966 936.0 observed 1 1
HC749908 Synechococcus elongatus pcc 7942 = fachb-805 50.6410256410256 2652.0 observed 1 1
HC753834 Synechococcus elongatus pcc 7942 = fachb-805 53.2663316582915 597.0 observed 1 1
HV331768 Synechococcus elongatus pcc 7942 = fachb-805 58.4097859327217 654.0 observed 1 1
HV331780 Synechococcus elongatus pcc 7942 = fachb-805 57.9022988505747 1392.0 observed 1 1
HW318161 Synechococcus elongatus pcc 7942 = fachb-805 59.4326241134752 1410.0 observed 1 1
JC196567 Synechococcus elongatus pcc 7942 = fachb-805 52.6748971193416 243.0 observed 1 1
JC196586 Synechococcus elongatus pcc 7942 = fachb-805 58.0882352941176 1632.0 observed 1 1
JC196589 Synechococcus elongatus pcc 7942 = fachb-805 56.0711523588554 1293.0 observed 1 1
JC196597 Synechococcus elongatus pcc 7942 = fachb-805 54.6494992846924 1398.0 observed 1 1
JC196605 Synechococcus elongatus pcc 7942 = fachb-805 57.0916538658474 1953.0 observed 1 1
JC196629 Synechococcus elongatus pcc 7942 = fachb-805 56.7258382642998 2535.0 observed 1 1
JC196631 Synechococcus elongatus pcc 7942 = fachb-805 55.9232613908873 2085.0 observed 1 1
JC196633 Synechococcus elongatus pcc 7942 = fachb-805 59.4666666666667 1500.0 observed 1 1
JC196644 Synechococcus elongatus pcc 7942 = fachb-805 59.1522157996146 1038.0 observed 1 1
JC196646 Synechococcus elongatus pcc 7942 = fachb-805 58.8531821045999 1587.0 observed 1 1
JC196664 Synechococcus elongatus pcc 7942 = fachb-805 57.2463768115942 1380.0 observed 1 1
LF649302 Synechococcus elongatus pcc 7942 = fachb-805 57.0219966159052 1182.0 observed 1 1
LQ246852 Synechococcus elongatus pcc 7942 = fachb-805 54.4176706827309 996.0 observed 1 1
LQ293266 Synechococcus elongatus pcc 7942 = fachb-805 47.7941176470588 816.0 observed 1 1
MA989679 Synechococcus elongatus pcc 7942 = fachb-805 53.2921810699589 1944.0 observed 1 1
MA989680 Synechococcus elongatus pcc 7942 = fachb-805 57.736516357206 1131.0 observed 1 1
MA989681 Synechococcus elongatus pcc 7942 = fachb-805 58.5585585585586 888.0 observed 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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