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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

20 rows where Is_annotated = 1, Is_protein_coding_sequence = 1 and Species_name = "Thermococcus litoralis"

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Suggested facets: GC_content, Sequence_length

Species_name 1

  • Thermococcus litoralis · 20 ✖

Sequence_status 1

  • observed 20

Is_protein_coding_sequence 1

  • 1 · 20 ✖

Is_annotated 1

  • 1 · 20 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
AX555788 Thermococcus litoralis 44.7702834799609 1023.0 observed 1 1
CS808194 Thermococcus litoralis 42.434988179669 846.0 observed 1 1
DD181415 Thermococcus litoralis 42.2365591397849 2325.0 observed 1 1
DD181416 Thermococcus litoralis 42.1935483870968 2325.0 observed 1 1
DD181417 Thermococcus litoralis 42.1505376344086 2325.0 observed 1 1
DD181418 Thermococcus litoralis 42.1505376344086 2325.0 observed 1 1
DD181419 Thermococcus litoralis 42.1935483870968 2325.0 observed 1 1
DD181420 Thermococcus litoralis 42.1935483870968 2325.0 observed 1 1
DD181421 Thermococcus litoralis 42.1505376344086 2325.0 observed 1 1
DD181422 Thermococcus litoralis 42.1935483870968 2325.0 observed 1 1
DD360333 Thermococcus litoralis 42.1935483870968 2325.0 observed 1 1
HB901388 Thermococcus litoralis 46.9011725293132 1194.0 observed 1 1
HB904687 Thermococcus litoralis 48.1680071492404 1119.0 observed 1 1
HB904689 Thermococcus litoralis 48.2573726541555 1119.0 observed 1 1
HB922511 Thermococcus litoralis 42.9738562091503 1224.0 observed 1 1
HB940078 Thermococcus litoralis 44.7845804988662 882.0 observed 1 1
HB959741 Thermococcus litoralis 45.7657657657658 1110.0 observed 1 1
HV189953 Thermococcus litoralis 43.8518518518519 675.0 observed 1 1
HV189956 Thermococcus litoralis 43.7037037037037 675.0 observed 1 1
HW906300 Thermococcus litoralis 42.5023877745941 1047.0 observed 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
Powered by Datasette · Queries took 657.674ms · Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT