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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

6 rows where Is_annotated = 1, Sequence_length = "720.0" and Species_name = "Physeter macrocephalus"

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Suggested facets: GC_content

Species_name 1

  • Physeter macrocephalus · 6 ✖

Sequence_status 1

  • predicted 6

Is_protein_coding_sequence 1

  • 1 6

Is_annotated 1

  • 1 · 6 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
LF442286 Physeter macrocephalus 63.3333333333333 720.0 predicted 1 1
LF477684 Physeter macrocephalus 51.8055555555556 720.0 predicted 1 1
LF513082 Physeter macrocephalus 63.3333333333333 720.0 predicted 1 1
LF548480 Physeter macrocephalus 54.1666666666667 720.0 predicted 1 1
LF583878 Physeter macrocephalus 51.6666666666667 720.0 predicted 1 1
MP690693 Physeter macrocephalus 41.3888888888889 720.0 predicted 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
Powered by Datasette · Queries took 1968.142ms · Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT