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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

98 rows where Is_annotated = 1, Sequence_status = "observed" and Species_name = "Pyrococcus horikoshii"

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Species_name 1

  • Pyrococcus horikoshii · 98 ✖

Sequence_status 1

  • observed · 98 ✖

Is_protein_coding_sequence 1

  • 1 98

Is_annotated 1

  • 1 · 98 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
AX077081 Pyrococcus horikoshii 40.9836065573771 244.0 observed 1 1
AX555761 Pyrococcus horikoshii 41.7635658914729 1032.0 observed 1 1
AX700681 Pyrococcus horikoshii 42.2496570644719 729.0 observed 1 1
AX826941 Pyrococcus horikoshii 42.512077294686 3933.0 observed 1 1
BD135870 Pyrococcus horikoshii 42.1709894332373 1041.0 observed 1 1
BD135871 Pyrococcus horikoshii 40.284757118928 1194.0 observed 1 1
BD143608 Pyrococcus horikoshii 39.1713747645951 531.0 observed 1 1
BD143609 Pyrococcus horikoshii 39.4144144144144 444.0 observed 1 1
BD166193 Pyrococcus horikoshii 43.5275080906149 1854.0 observed 1 1
BD448161 Pyrococcus horikoshii 38.4469696969697 1056.0 observed 1 1
CS318821 Pyrococcus horikoshii 46.7005076142132 591.0 observed 1 1
CS398330 Pyrococcus horikoshii 44.5830085736555 1283.0 observed 1 1
CS469306 Pyrococcus horikoshii 44.3910256410256 624.0 observed 1 1
CS469308 Pyrococcus horikoshii 46.358543417367 714.0 observed 1 1
CS469310 Pyrococcus horikoshii 49.7674418604651 645.0 observed 1 1
DD046679 Pyrococcus horikoshii 45.5858747993579 1869.0 observed 1 1
DD116522 Pyrococcus horikoshii 43.6619718309859 852.0 observed 1 1
DD159216 Pyrococcus horikoshii 44.9652777777778 1152.0 observed 1 1
DD224456 Pyrococcus horikoshii 43.4108527131783 774.0 observed 1 1
DD234802 Pyrococcus horikoshii 42.1367521367521 1170.0 observed 1 1
DD234803 Pyrococcus horikoshii 41.7948717948718 1170.0 observed 1 1
DD362144 Pyrococcus horikoshii 41.6289592760181 1326.0 observed 1 1
DD382894 Pyrococcus horikoshii 43.6236933797909 4305.0 observed 1 1
DD382895 Pyrococcus horikoshii 42.1080791867309 1869.0 observed 1 1
DD402698 Pyrococcus horikoshii 42.566510172144 1278.0 observed 1 1
DD410275 Pyrococcus horikoshii 38.9863547758285 513.0 observed 1 1
DD410698 Pyrococcus horikoshii 45.2747252747253 1365.0 observed 1 1
DD421356 Pyrococcus horikoshii 43.3333333333333 1170.0 observed 1 1
DJ062845 Pyrococcus horikoshii 44.0143369175627 1395.0 observed 1 1
DJ128344 Pyrococcus horikoshii 39.0 600.0 observed 1 1
DJ399670 Pyrococcus horikoshii 43.4666666666667 750.0 observed 1 1
DJ399671 Pyrococcus horikoshii 44.2786069651741 1407.0 observed 1 1
DJ399672 Pyrococcus horikoshii 43.107476635514 2568.0 observed 1 1
DJ492433 Pyrococcus horikoshii 48.969696969697 1650.0 observed 1 1
DM462690 Pyrococcus horikoshii 40.893470790378 582.0 observed 1 1
E32411 Pyrococcus horikoshii 41.6075650118203 1269.0 observed 1 1
E33103 Pyrococcus horikoshii 45.9407831900669 1047.0 observed 1 1
E39152 Pyrococcus horikoshii 40.8333333333333 600.0 observed 1 1
E59099 Pyrococcus horikoshii 45.3453453453453 999.0 observed 1 1
FB335510 Pyrococcus horikoshii 37.7358490566038 795.0 observed 1 1
FB336567 Pyrococcus horikoshii 44.2982456140351 228.0 observed 1 1
FB793691 Pyrococcus horikoshii 44.6633825944171 609.0 observed 1 1
FW556549 Pyrococcus horikoshii 42.7184466019417 3708.0 observed 1 1
FW556554 Pyrococcus horikoshii 43.5534591194969 1272.0 observed 1 1
GM870451 Pyrococcus horikoshii 46.5378421900161 621.0 observed 1 1
GM870452 Pyrococcus horikoshii 45.2702702702703 888.0 observed 1 1
GN101149 Pyrococcus horikoshii 43.2017543859649 1368.0 observed 1 1
GN102760 Pyrococcus horikoshii 43.9890710382514 732.0 observed 1 1
GN103212 Pyrococcus horikoshii 41.4473684210526 912.0 observed 1 1
GN104836 Pyrococcus horikoshii 41.9509275882705 1671.0 observed 1 1
GN108822 Pyrococcus horikoshii 43.8202247191011 534.0 observed 1 1
GN109424 Pyrococcus horikoshii 43.4684684684685 1332.0 observed 1 1
GN128462 Pyrococcus horikoshii 44.6009389671362 852.0 observed 1 1
HB868772 Pyrococcus horikoshii 43.8116932422172 1317.0 observed 1 1
HB868918 Pyrococcus horikoshii 44.2265795206972 918.0 observed 1 1
HB870563 Pyrococcus horikoshii 43.6781609195402 783.0 observed 1 1
HB880690 Pyrococcus horikoshii 42.8571428571428 1029.0 observed 1 1
HB881705 Pyrococcus horikoshii 42.6858513189448 1251.0 observed 1 1
HB881729 Pyrococcus horikoshii 47.0528455284553 984.0 observed 1 1
HB881745 Pyrococcus horikoshii 39.6031746031746 1260.0 observed 1 1
HB886051 Pyrococcus horikoshii 41.5695415695416 1287.0 observed 1 1
HB892222 Pyrococcus horikoshii 43.1860036832413 2172.0 observed 1 1
HB892236 Pyrococcus horikoshii 37.7581120943953 339.0 observed 1 1
HB898979 Pyrococcus horikoshii 41.958041958042 429.0 observed 1 1
HB901250 Pyrococcus horikoshii 41.9568822553897 1206.0 observed 1 1
HB901258 Pyrococcus horikoshii 38.6904761904762 1176.0 observed 1 1
HB905354 Pyrococcus horikoshii 45.6565656565656 495.0 observed 1 1
HB913319 Pyrococcus horikoshii 44.0 975.0 observed 1 1
HB913583 Pyrococcus horikoshii 42.9850746268657 1005.0 observed 1 1
HB958098 Pyrococcus horikoshii 41.0381184103812 1233.0 observed 1 1
HC496642 Pyrococcus horikoshii 42.2305764411028 798.0 observed 1 1
HC497477 Pyrococcus horikoshii 39.5173453996983 663.0 observed 1 1
HC498261 Pyrococcus horikoshii 41.0144927536232 690.0 observed 1 1
HC743588 Pyrococcus horikoshii 43.6450839328537 417.0 observed 1 1
HC748036 Pyrococcus horikoshii 44.5 1200.0 observed 1 1
HC749102 Pyrococcus horikoshii 43.9794419970631 1362.0 observed 1 1
HC892837 Pyrococcus horikoshii 44.5676274944568 1353.0 observed 1 1
HC893813 Pyrococcus horikoshii 44.1336441336441 1287.0 observed 1 1
HC894213 Pyrococcus horikoshii 46.8639887244538 1419.0 observed 1 1
HC894215 Pyrococcus horikoshii 43.466107617051 1431.0 observed 1 1
HC894547 Pyrococcus horikoshii 42.8154631655726 1371.0 observed 1 1
HC897148 Pyrococcus horikoshii 42.1711899791232 1437.0 observed 1 1
HC906843 Pyrococcus horikoshii 41.6267942583732 627.0 observed 1 1
HC910481 Pyrococcus horikoshii 44.0917107583774 567.0 observed 1 1
HV037554 Pyrococcus horikoshii 51.490514905149 738.0 observed 1 1
HV189933 Pyrococcus horikoshii 40.8748114630468 663.0 observed 1 1
HV189944 Pyrococcus horikoshii 41.0104011887073 673.0 observed 1 1
HV579276 Pyrococcus horikoshii 42.3449612403101 1032.0 observed 1 1
HV703805 Pyrococcus horikoshii 48.9326765188834 1218.0 observed 1 1
HV703808 Pyrococcus horikoshii 49.4897959183673 1176.0 observed 1 1
HV703820 Pyrococcus horikoshii 48.2433590402742 1167.0 observed 1 1
HV781829 Pyrococcus horikoshii 41.1231884057971 552.0 observed 1 1
HZ405834 Pyrococcus horikoshii 41.757443718228 1377.0 observed 1 1
HZ405837 Pyrococcus horikoshii 52.1850899742931 1167.0 observed 1 1
LF150763 Pyrococcus horikoshii 38.1400208986416 957.0 observed 1 1
LF392976 Pyrococcus horikoshii 46.031746031746 945.0 observed 1 1
MP214708 Pyrococcus horikoshii 44.4114737883284 1011.0 observed 1 1
OG166294 Pyrococcus horikoshii 41.8166238217652 1167.0 observed 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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