Marine_Sequences
Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT
- Sequence_accession_number
- Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
- Species_name
- Species associated with the sequence, linking to the Marine Species table. Searchable
- GC_content
- GC content of the sequence
- Sequence_length
- Length of the sequence
- Sequence_status
- Status of the sequence (e.g., confirmed, predicted)
- Is_protein_coding_sequence
- Indicates if the sequence is protein-coding (1 for yes, 0 for no)
- Is_annotated
- Indicates if the sequence has been annotated (1 for yes, 0 for no)
159 rows where Is_annotated = 1, Sequence_status = "observed" and Species_name = "Shewanella oneidensis mr-1"
This data as json, CSV (advanced)
Species_name 1
- Shewanella oneidensis mr-1 · 159 ✖
Sequence_status 1
- observed · 159 ✖
Is_protein_coding_sequence 1
- 1 159
Is_annotated 1
- 1 · 159 ✖
| Sequence_accession_number ▼ | Species_name | GC_content | Sequence_length | Sequence_status | Is_protein_coding_sequence | Is_annotated |
|---|---|---|---|---|---|---|
| FB334209 | Shewanella oneidensis mr-1 | 45.8036984352774 | 2109.0 | observed | 1 | 1 |
| FB791809 | Shewanella oneidensis mr-1 | 49.8633879781421 | 732.0 | observed | 1 | 1 |
| FB791811 | Shewanella oneidensis mr-1 | 44.6327683615819 | 708.0 | observed | 1 | 1 |
| FB805248 | Shewanella oneidensis mr-1 | 50.3213957759412 | 1089.0 | observed | 1 | 1 |
| FB805250 | Shewanella oneidensis mr-1 | 50.0 | 1098.0 | observed | 1 | 1 |
| FB805252 | Shewanella oneidensis mr-1 | 46.4419475655431 | 1068.0 | observed | 1 | 1 |
| FB805254 | Shewanella oneidensis mr-1 | 51.8029903254178 | 1137.0 | observed | 1 | 1 |
| FB845004 | Shewanella oneidensis mr-1 | 50.4089979550102 | 978.0 | observed | 1 | 1 |
| GM953989 | Shewanella oneidensis mr-1 | 42.9463171036205 | 1602.0 | observed | 1 | 1 |
| GM954095 | Shewanella oneidensis mr-1 | 50.5952380952381 | 1008.0 | observed | 1 | 1 |
| GM955375 | Shewanella oneidensis mr-1 | 45.3551912568306 | 549.0 | observed | 1 | 1 |
| GM955743 | Shewanella oneidensis mr-1 | 51.1304909560724 | 3096.0 | observed | 1 | 1 |
| GM956196 | Shewanella oneidensis mr-1 | 45.0511945392491 | 1758.0 | observed | 1 | 1 |
| GM956286 | Shewanella oneidensis mr-1 | 53.2423208191126 | 879.0 | observed | 1 | 1 |
| GM957227 | Shewanella oneidensis mr-1 | 53.1851851851852 | 675.0 | observed | 1 | 1 |
| GM957414 | Shewanella oneidensis mr-1 | 47.9591836734694 | 1470.0 | observed | 1 | 1 |
| GM958477 | Shewanella oneidensis mr-1 | 49.3775933609959 | 723.0 | observed | 1 | 1 |
| GM959059 | Shewanella oneidensis mr-1 | 43.7158469945355 | 2379.0 | observed | 1 | 1 |
| GM960811 | Shewanella oneidensis mr-1 | 43.6363636363636 | 660.0 | observed | 1 | 1 |
| GM961107 | Shewanella oneidensis mr-1 | 46.2490332559938 | 1293.0 | observed | 1 | 1 |
| GN096804 | Shewanella oneidensis mr-1 | 49.6031746031746 | 252.0 | observed | 1 | 1 |
| GN097538 | Shewanella oneidensis mr-1 | 50.0750750750751 | 1332.0 | observed | 1 | 1 |
| GN098818 | Shewanella oneidensis mr-1 | 43.630017452007 | 1146.0 | observed | 1 | 1 |
| GN099017 | Shewanella oneidensis mr-1 | 46.5656565656566 | 990.0 | observed | 1 | 1 |
| GN104959 | Shewanella oneidensis mr-1 | 48.5964912280702 | 1140.0 | observed | 1 | 1 |
| GN105463 | Shewanella oneidensis mr-1 | 48.2180293501048 | 477.0 | observed | 1 | 1 |
| GN107757 | Shewanella oneidensis mr-1 | 51.3937282229965 | 1722.0 | observed | 1 | 1 |
| GN108124 | Shewanella oneidensis mr-1 | 46.0843373493976 | 1992.0 | observed | 1 | 1 |
| GN108424 | Shewanella oneidensis mr-1 | 49.7967479674797 | 492.0 | observed | 1 | 1 |
| GN109742 | Shewanella oneidensis mr-1 | 47.8260869565217 | 621.0 | observed | 1 | 1 |
| GN117156 | Shewanella oneidensis mr-1 | 51.3961605584642 | 1146.0 | observed | 1 | 1 |
| GN119548 | Shewanella oneidensis mr-1 | 47.3499780989926 | 2283.0 | observed | 1 | 1 |
| GN120249 | Shewanella oneidensis mr-1 | 44.9612403100775 | 258.0 | observed | 1 | 1 |
| GN120623 | Shewanella oneidensis mr-1 | 48.0132450331126 | 1812.0 | observed | 1 | 1 |
| GN123691 | Shewanella oneidensis mr-1 | 46.4285714285714 | 252.0 | observed | 1 | 1 |
| GN124406 | Shewanella oneidensis mr-1 | 45.6140350877193 | 399.0 | observed | 1 | 1 |
| GN124608 | Shewanella oneidensis mr-1 | 48.729446935725 | 669.0 | observed | 1 | 1 |
| GN124842 | Shewanella oneidensis mr-1 | 48.661800486618 | 822.0 | observed | 1 | 1 |
| GN126824 | Shewanella oneidensis mr-1 | 50.2255639097744 | 1995.0 | observed | 1 | 1 |
| GN127625 | Shewanella oneidensis mr-1 | 45.1816745655608 | 633.0 | observed | 1 | 1 |
| GN127723 | Shewanella oneidensis mr-1 | 44.8717948717949 | 780.0 | observed | 1 | 1 |
| GN127725 | Shewanella oneidensis mr-1 | 41.6666666666667 | 768.0 | observed | 1 | 1 |
| GN127727 | Shewanella oneidensis mr-1 | 47.411003236246 | 618.0 | observed | 1 | 1 |
| HB896826 | Shewanella oneidensis mr-1 | 46.6896948762234 | 1737.0 | observed | 1 | 1 |
| HB898003 | Shewanella oneidensis mr-1 | 43.6974789915966 | 357.0 | observed | 1 | 1 |
| HB898005 | Shewanella oneidensis mr-1 | 41.7366946778711 | 357.0 | observed | 1 | 1 |
| HB898171 | Shewanella oneidensis mr-1 | 47.4206349206349 | 2016.0 | observed | 1 | 1 |
| HB900119 | Shewanella oneidensis mr-1 | 47.3197781885397 | 1623.0 | observed | 1 | 1 |
| HB900432 | Shewanella oneidensis mr-1 | 47.5056689342404 | 882.0 | observed | 1 | 1 |
| HB900434 | Shewanella oneidensis mr-1 | 48.1735159817352 | 876.0 | observed | 1 | 1 |
| HB900436 | Shewanella oneidensis mr-1 | 46.7561521252796 | 894.0 | observed | 1 | 1 |
| HB900438 | Shewanella oneidensis mr-1 | 46.4323748668797 | 939.0 | observed | 1 | 1 |
| HB900440 | Shewanella oneidensis mr-1 | 50.0 | 978.0 | observed | 1 | 1 |
| HB901798 | Shewanella oneidensis mr-1 | 48.0327868852459 | 1830.0 | observed | 1 | 1 |
| HB901800 | Shewanella oneidensis mr-1 | 52.0134228187919 | 1788.0 | observed | 1 | 1 |
| HB904718 | Shewanella oneidensis mr-1 | 44.2122186495177 | 1866.0 | observed | 1 | 1 |
| HB905894 | Shewanella oneidensis mr-1 | 48.1481481481482 | 1377.0 | observed | 1 | 1 |
| HB905896 | Shewanella oneidensis mr-1 | 49.6927803379416 | 1302.0 | observed | 1 | 1 |
| HB905898 | Shewanella oneidensis mr-1 | 48.208722741433 | 1284.0 | observed | 1 | 1 |
| HB905900 | Shewanella oneidensis mr-1 | 47.0731707317073 | 1230.0 | observed | 1 | 1 |
| HB905902 | Shewanella oneidensis mr-1 | 49.7512437810945 | 1608.0 | observed | 1 | 1 |
| HB905904 | Shewanella oneidensis mr-1 | 50.5876068376068 | 1872.0 | observed | 1 | 1 |
| HB908125 | Shewanella oneidensis mr-1 | 45.4367984382626 | 2049.0 | observed | 1 | 1 |
| HB910376 | Shewanella oneidensis mr-1 | 45.959595959596 | 1188.0 | observed | 1 | 1 |
| HB911172 | Shewanella oneidensis mr-1 | 50.7062146892655 | 1416.0 | observed | 1 | 1 |
| HB911838 | Shewanella oneidensis mr-1 | 43.6426116838488 | 291.0 | observed | 1 | 1 |
| HB911996 | Shewanella oneidensis mr-1 | 49.7031382527566 | 1179.0 | observed | 1 | 1 |
| HB912095 | Shewanella oneidensis mr-1 | 41.7624521072797 | 261.0 | observed | 1 | 1 |
| HB912265 | Shewanella oneidensis mr-1 | 47.4777448071217 | 1011.0 | observed | 1 | 1 |
| HB912798 | Shewanella oneidensis mr-1 | 50.4327301337529 | 3813.0 | observed | 1 | 1 |
| HB913001 | Shewanella oneidensis mr-1 | 49.2625368731563 | 1017.0 | observed | 1 | 1 |
| HB914156 | Shewanella oneidensis mr-1 | 49.1898148148148 | 864.0 | observed | 1 | 1 |
| HB917345 | Shewanella oneidensis mr-1 | 51.5387949718249 | 2307.0 | observed | 1 | 1 |
| HB920608 | Shewanella oneidensis mr-1 | 52.8083028083028 | 1638.0 | observed | 1 | 1 |
| HB923468 | Shewanella oneidensis mr-1 | 46.7811158798283 | 1398.0 | observed | 1 | 1 |
| HB928206 | Shewanella oneidensis mr-1 | 47.870778267254 | 681.0 | observed | 1 | 1 |
| HB929686 | Shewanella oneidensis mr-1 | 46.6076696165192 | 339.0 | observed | 1 | 1 |
| HB929688 | Shewanella oneidensis mr-1 | 42.7728613569322 | 339.0 | observed | 1 | 1 |
| HB929690 | Shewanella oneidensis mr-1 | 49.8525073746313 | 339.0 | observed | 1 | 1 |
| HB931724 | Shewanella oneidensis mr-1 | 47.6666666666667 | 1500.0 | observed | 1 | 1 |
| HB932429 | Shewanella oneidensis mr-1 | 37.6344086021505 | 1023.0 | observed | 1 | 1 |
| HB932431 | Shewanella oneidensis mr-1 | 48.9087301587302 | 1008.0 | observed | 1 | 1 |
| HB935305 | Shewanella oneidensis mr-1 | 47.1717171717172 | 1980.0 | observed | 1 | 1 |
| HB935307 | Shewanella oneidensis mr-1 | 48.3479105928086 | 2058.0 | observed | 1 | 1 |
| HB937710 | Shewanella oneidensis mr-1 | 52.1367521367521 | 468.0 | observed | 1 | 1 |
| HB939524 | Shewanella oneidensis mr-1 | 49.1399349139935 | 2151.0 | observed | 1 | 1 |
| HB939526 | Shewanella oneidensis mr-1 | 47.834274952919 | 2124.0 | observed | 1 | 1 |
| HB941609 | Shewanella oneidensis mr-1 | 49.665711556829 | 3141.0 | observed | 1 | 1 |
| HB941611 | Shewanella oneidensis mr-1 | 50.8269720101781 | 3144.0 | observed | 1 | 1 |
| HB941613 | Shewanella oneidensis mr-1 | 48.8357256778309 | 3135.0 | observed | 1 | 1 |
| HB943041 | Shewanella oneidensis mr-1 | 43.3846153846154 | 975.0 | observed | 1 | 1 |
| HB946845 | Shewanella oneidensis mr-1 | 46.1481481481482 | 1350.0 | observed | 1 | 1 |
| HB947294 | Shewanella oneidensis mr-1 | 48.1818181818182 | 1320.0 | observed | 1 | 1 |
| HB947298 | Shewanella oneidensis mr-1 | 47.1380471380471 | 1188.0 | observed | 1 | 1 |
| HB949108 | Shewanella oneidensis mr-1 | 51.7241379310345 | 1218.0 | observed | 1 | 1 |
| HB949110 | Shewanella oneidensis mr-1 | 44.3192488262911 | 1065.0 | observed | 1 | 1 |
| HB949112 | Shewanella oneidensis mr-1 | 51.1173184357542 | 1074.0 | observed | 1 | 1 |
| HB949529 | Shewanella oneidensis mr-1 | 46.6550319953461 | 1719.0 | observed | 1 | 1 |
| HB949531 | Shewanella oneidensis mr-1 | 43.8144329896907 | 1746.0 | observed | 1 | 1 |
| HB949533 | Shewanella oneidensis mr-1 | 52.3206751054852 | 1659.0 | observed | 1 | 1 |
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CREATE TABLE Marine_Sequences (
Sequence_accession_number TEXT PRIMARY KEY,
Species_name TEXT,
GC_content TEXT,
Sequence_length TEXT,
Sequence_status TEXT,
Is_protein_coding_sequence INTEGER,
Is_annotated INTEGER,
FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
);