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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

50 rows where Is_annotated = 1 and Species_name = "Anguilla japonica"

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These facets timed out: Species_name

Sequence_status 1

  • observed 50

Is_protein_coding_sequence 1

  • 1 50

Is_annotated 1

  • 1 · 50 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
DM011590 Anguilla japonica 56.3235294117647 680.0 observed 1 1
DM011611 Anguilla japonica 62.4555160142349 562.0 observed 1 1
DM011622 Anguilla japonica 62.5210084033613 595.0 observed 1 1
DM011631 Anguilla japonica 51.5804597701149 696.0 observed 1 1
DM011647 Anguilla japonica 61.5615615615616 666.0 observed 1 1
DM011684 Anguilla japonica 61.624649859944 714.0 observed 1 1
DM011703 Anguilla japonica 60.1910828025478 628.0 observed 1 1
DM011761 Anguilla japonica 64.6034816247582 517.0 observed 1 1
DM011768 Anguilla japonica 57.2784810126582 632.0 observed 1 1
DM011782 Anguilla japonica 59.236641221374 655.0 observed 1 1
DM011785 Anguilla japonica 65.3623188405797 690.0 observed 1 1
DM011836 Anguilla japonica 59.1194968553459 318.0 observed 1 1
DM011873 Anguilla japonica 59.3481989708405 583.0 observed 1 1
DM011875 Anguilla japonica 56.8561872909699 598.0 observed 1 1
DM011901 Anguilla japonica 63.2692307692308 520.0 observed 1 1
DM011979 Anguilla japonica 69.7674418604651 473.0 observed 1 1
DM012001 Anguilla japonica 62.3745819397993 598.0 observed 1 1
DM012008 Anguilla japonica 68.4647302904564 482.0 observed 1 1
DM012011 Anguilla japonica 51.9178082191781 730.0 observed 1 1
DM012024 Anguilla japonica 65.0943396226415 530.0 observed 1 1
DM012069 Anguilla japonica 65.625 608.0 observed 1 1
DM012078 Anguilla japonica 55.3050397877984 754.0 observed 1 1
DM012086 Anguilla japonica 51.605504587156 436.0 observed 1 1
DM012091 Anguilla japonica 60.6397774687065 719.0 observed 1 1
DM012133 Anguilla japonica 56.020942408377 764.0 observed 1 1
DM012134 Anguilla japonica 58.7994542974079 733.0 observed 1 1
DM012166 Anguilla japonica 59.6256684491979 374.0 observed 1 1
DM012172 Anguilla japonica 63.7724550898204 668.0 observed 1 1
DM012199 Anguilla japonica 53.7074148296593 499.0 observed 1 1
DM012216 Anguilla japonica 60.4519774011299 531.0 observed 1 1
DM012219 Anguilla japonica 58.3463338533541 641.0 observed 1 1
DM012235 Anguilla japonica 60.4519774011299 531.0 observed 1 1
DM012279 Anguilla japonica 63.6666666666667 300.0 observed 1 1
DM012282 Anguilla japonica 56.055900621118 644.0 observed 1 1
DM012307 Anguilla japonica 58.0917874396135 828.0 observed 1 1
DM012315 Anguilla japonica 55.3133514986376 734.0 observed 1 1
DM012316 Anguilla japonica 55.729794933655 829.0 observed 1 1
DM012451 Anguilla japonica 62.3475609756098 656.0 observed 1 1
DM012520 Anguilla japonica 58.9411764705882 850.0 observed 1 1
DM012584 Anguilla japonica 49.7942386831276 243.0 observed 1 1
DM012603 Anguilla japonica 44.1176470588235 816.0 observed 1 1
DM012652 Anguilla japonica 65.3116531165312 738.0 observed 1 1
DM012674 Anguilla japonica 62.8647214854111 754.0 observed 1 1
DM012727 Anguilla japonica 58.679706601467 818.0 observed 1 1
HH771222 Anguilla japonica 50.6600660066007 1212.0 observed 1 1
HH771246 Anguilla japonica 55.6118143459916 1185.0 observed 1 1
HW636696 Anguilla japonica 49.2857142857143 420.0 observed 1 1
HW636697 Anguilla japonica 49.2857142857143 420.0 observed 1 1
HW636698 Anguilla japonica 49.2857142857143 420.0 observed 1 1
HW636721 Anguilla japonica 49.0476190476191 420.0 observed 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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