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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

113 rows where Is_annotated = 1 and Species_name = "Colwellia psychrerythraea 34h"

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
CS497394 Colwellia psychrerythraea 34h 39.8958333333333 960.0 observed 1 1
DI356048 Colwellia psychrerythraea 34h 40.6412069778406 2121.0 observed 1 1
FB334441 Colwellia psychrerythraea 34h 39.9905571293673 2118.0 observed 1 1
FB335220 Colwellia psychrerythraea 34h 39.8692810457516 765.0 observed 1 1
FB783845 Colwellia psychrerythraea 34h 39.7216951296648 1581.0 observed 1 1
FB784865 Colwellia psychrerythraea 34h 42.4920127795527 939.0 observed 1 1
FB785345 Colwellia psychrerythraea 34h 37.7572016460905 972.0 observed 1 1
FB791967 Colwellia psychrerythraea 34h 37.9943502824859 708.0 observed 1 1
FB800713 Colwellia psychrerythraea 34h 49.7289972899729 2952.0 observed 1 1
FB805448 Colwellia psychrerythraea 34h 38.9204545454545 1056.0 observed 1 1
FB805450 Colwellia psychrerythraea 34h 41.7962003454231 1158.0 observed 1 1
FB805452 Colwellia psychrerythraea 34h 42.7555555555556 1125.0 observed 1 1
FB845096 Colwellia psychrerythraea 34h 38.6996904024768 969.0 observed 1 1
FB867101 Colwellia psychrerythraea 34h 41.2835249042146 1044.0 observed 1 1
GM953216 Colwellia psychrerythraea 34h 34.8484848484849 264.0 observed 1 1
GM954137 Colwellia psychrerythraea 34h 41.1242603550296 1014.0 observed 1 1
GM954310 Colwellia psychrerythraea 34h 38.3661560904449 1371.0 observed 1 1
GM954767 Colwellia psychrerythraea 34h 38.6213408876298 1059.0 observed 1 1
GM954769 Colwellia psychrerythraea 34h 38.9363722697056 1053.0 observed 1 1
GM955427 Colwellia psychrerythraea 34h 39.5189003436426 582.0 observed 1 1
GM956760 Colwellia psychrerythraea 34h 42.0765027322404 549.0 observed 1 1
GM957144 Colwellia psychrerythraea 34h 39.8907103825137 915.0 observed 1 1
GM957255 Colwellia psychrerythraea 34h 42.1416234887738 579.0 observed 1 1
GM958256 Colwellia psychrerythraea 34h 41.0331384015595 1026.0 observed 1 1
GM958505 Colwellia psychrerythraea 34h 39.5348837209302 774.0 observed 1 1
GM958711 Colwellia psychrerythraea 34h 41.1646586345381 498.0 observed 1 1
GM958858 Colwellia psychrerythraea 34h 39.6969696969697 330.0 observed 1 1
GM959324 Colwellia psychrerythraea 34h 37.8600823045267 1458.0 observed 1 1
GM960393 Colwellia psychrerythraea 34h 40.3448275862069 870.0 observed 1 1
GM960843 Colwellia psychrerythraea 34h 38.7144992526158 669.0 observed 1 1
GN096546 Colwellia psychrerythraea 34h 42.2284644194757 1068.0 observed 1 1
GN096850 Colwellia psychrerythraea 34h 39.7590361445783 249.0 observed 1 1
GN097835 Colwellia psychrerythraea 34h 39.1797556719023 1146.0 observed 1 1
GN099039 Colwellia psychrerythraea 34h 37.0149253731343 1005.0 observed 1 1
GN101603 Colwellia psychrerythraea 34h 38.6430678466077 1356.0 observed 1 1
GN101605 Colwellia psychrerythraea 34h 41.455938697318 1305.0 observed 1 1
GN101607 Colwellia psychrerythraea 34h 41.0906298003072 1302.0 observed 1 1
GN105111 Colwellia psychrerythraea 34h 40.4951370468612 1131.0 observed 1 1
GN105513 Colwellia psychrerythraea 34h 38.1344307270233 729.0 observed 1 1
GN106381 Colwellia psychrerythraea 34h 39.7435897435898 546.0 observed 1 1
GN107079 Colwellia psychrerythraea 34h 41.6840640222686 1437.0 observed 1 1
GN108164 Colwellia psychrerythraea 34h 41.8502202643172 2043.0 observed 1 1
GN108588 Colwellia psychrerythraea 34h 42.8571428571428 483.0 observed 1 1
GN109073 Colwellia psychrerythraea 34h 39.119170984456 1158.0 observed 1 1
GN109818 Colwellia psychrerythraea 34h 38.6473429951691 621.0 observed 1 1
GN109949 Colwellia psychrerythraea 34h 37.7659574468085 1128.0 observed 1 1
GN110239 Colwellia psychrerythraea 34h 40.5063291139241 474.0 observed 1 1
GN111638 Colwellia psychrerythraea 34h 38.0208333333333 384.0 observed 1 1
GN117192 Colwellia psychrerythraea 34h 41.025641025641 1170.0 observed 1 1
GN118944 Colwellia psychrerythraea 34h 40.6576980568012 1338.0 observed 1 1
GN119778 Colwellia psychrerythraea 34h 47.3958333333333 768.0 observed 1 1
GN120007 Colwellia psychrerythraea 34h 41.3223140495868 1089.0 observed 1 1
GN120337 Colwellia psychrerythraea 34h 42.7536231884058 276.0 observed 1 1
GN120813 Colwellia psychrerythraea 34h 38.6138613861386 1818.0 observed 1 1
GN121936 Colwellia psychrerythraea 34h 38.7069689336692 1191.0 observed 1 1
GN122960 Colwellia psychrerythraea 34h 41.6010498687664 762.0 observed 1 1
GN123879 Colwellia psychrerythraea 34h 47.123719464145 1269.0 observed 1 1
GN123881 Colwellia psychrerythraea 34h 42.1142369991475 1173.0 observed 1 1
GN124268 Colwellia psychrerythraea 34h 38.9830508474576 708.0 observed 1 1
GN124464 Colwellia psychrerythraea 34h 37.5308641975309 405.0 observed 1 1
GN125006 Colwellia psychrerythraea 34h 41.6049382716049 810.0 observed 1 1
GN127112 Colwellia psychrerythraea 34h 41.1764705882353 1989.0 observed 1 1
GN127827 Colwellia psychrerythraea 34h 40.1041666666667 768.0 observed 1 1
GN127829 Colwellia psychrerythraea 34h 39.7196261682243 642.0 observed 1 1
HB437255 Colwellia psychrerythraea 34h 38.8316151202749 291.0 observed 1 1
HB967950 Colwellia psychrerythraea 34h 38.6883273164862 1662.0 observed 1 1
HB969366 Colwellia psychrerythraea 34h 41.290893015031 1131.0 observed 1 1
HB969743 Colwellia psychrerythraea 34h 41.038961038961 1155.0 observed 1 1
HB969745 Colwellia psychrerythraea 34h 40.7407407407407 999.0 observed 1 1
HB970028 Colwellia psychrerythraea 34h 40.3321470937129 843.0 observed 1 1
HB970671 Colwellia psychrerythraea 34h 38.5516506922258 939.0 observed 1 1
HB970972 Colwellia psychrerythraea 34h 40.5660377358491 636.0 observed 1 1
HB970974 Colwellia psychrerythraea 34h 40.5797101449275 414.0 observed 1 1
HB970976 Colwellia psychrerythraea 34h 40.3381642512077 414.0 observed 1 1
HB972101 Colwellia psychrerythraea 34h 40.3073286052009 846.0 observed 1 1
HB972475 Colwellia psychrerythraea 34h 37.8787878787879 198.0 observed 1 1
HB973479 Colwellia psychrerythraea 34h 39.0710382513661 732.0 observed 1 1
HB973813 Colwellia psychrerythraea 34h 35.8719646799117 906.0 observed 1 1
HC463090 Colwellia psychrerythraea 34h 42.0081967213115 1464.0 observed 1 1
HC463092 Colwellia psychrerythraea 34h 45.0819672131148 1464.0 observed 1 1
HC495491 Colwellia psychrerythraea 34h 40.5708460754332 981.0 observed 1 1
HC496388 Colwellia psychrerythraea 34h 37.8787878787879 1254.0 observed 1 1
HC505306 Colwellia psychrerythraea 34h 37.6395534290271 627.0 observed 1 1
HC505958 Colwellia psychrerythraea 34h 39.5323545405112 1839.0 observed 1 1
HC506248 Colwellia psychrerythraea 34h 37.5850340136054 588.0 observed 1 1
HC506250 Colwellia psychrerythraea 34h 37.6016260162602 492.0 observed 1 1
HC506517 Colwellia psychrerythraea 34h 41.8981481481482 864.0 observed 1 1
HC743016 Colwellia psychrerythraea 34h 45.4022988505747 174.0 observed 1 1
HC743018 Colwellia psychrerythraea 34h 40.8045977011494 174.0 observed 1 1
HC743077 Colwellia psychrerythraea 34h 40.1559454191033 513.0 observed 1 1
HC743294 Colwellia psychrerythraea 34h 40.7692307692308 390.0 observed 1 1
HC743296 Colwellia psychrerythraea 34h 40.0516795865633 387.0 observed 1 1
HC744318 Colwellia psychrerythraea 34h 37.3239436619718 426.0 observed 1 1
HC744536 Colwellia psychrerythraea 34h 38.6200716845878 1116.0 observed 1 1
HC749291 Colwellia psychrerythraea 34h 35.9150889271371 1743.0 observed 1 1
HC749433 Colwellia psychrerythraea 34h 41.9003115264798 1284.0 observed 1 1
HC749876 Colwellia psychrerythraea 34h 40.0232018561485 2586.0 observed 1 1
HC750697 Colwellia psychrerythraea 34h 41.4841849148418 822.0 observed 1 1
HC753282 Colwellia psychrerythraea 34h 46.4114832535885 1254.0 observed 1 1
HC753284 Colwellia psychrerythraea 34h 46.4912280701754 1254.0 observed 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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