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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

10 rows where Is_annotated = 1 and Species_name = "Echinophyllia sp. sc22"

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These facets timed out: Sequence_status

Species_name 1

  • Echinophyllia sp. sc22 · 10 ✖

Is_protein_coding_sequence 1

  • 1 10

Is_annotated 1

  • 1 · 10 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
DD260161 Echinophyllia sp. sc22 46.1309523809524 672.0 predicted 1 1
DD260162 Echinophyllia sp. sc22 46.1309523809524 672.0 predicted 1 1
DD260163 Echinophyllia sp. sc22 46.7261904761905 672.0 predicted 1 1
DD260164 Echinophyllia sp. sc22 46.4285714285714 672.0 predicted 1 1
DJ432814 Echinophyllia sp. sc22 45.9259259259259 675.0 predicted 1 1
HJ978347 Echinophyllia sp. sc22 55.3571428571428 672.0 predicted 1 1
HJ978348 Echinophyllia sp. sc22 55.3571428571428 672.0 predicted 1 1
HJ978349 Echinophyllia sp. sc22 47.1111111111111 675.0 predicted 1 1
MA823564 Echinophyllia sp. sc22 63.4074074074074 675.0 predicted 1 1
MA823565 Echinophyllia sp. sc22 63.2592592592593 675.0 predicted 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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