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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

16 rows where Is_annotated = 1 and Species_name = "Labrus bergylta"

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Suggested facets: Sequence_length

Species_name 1

  • Labrus bergylta · 16 ✖

Sequence_status 1

  • predicted 16

Is_protein_coding_sequence 1

  • 1 16

Is_annotated 1

  • 1 · 16 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
HL763442 Labrus bergylta 55.4018445322793 1518.0 predicted 1 1
HZ198566 Labrus bergylta 54.320987654321 162.0 predicted 1 1
HZ203082 Labrus bergylta 50.0 162.0 predicted 1 1
HZ207598 Labrus bergylta 56.7901234567901 162.0 predicted 1 1
HZ212114 Labrus bergylta 52.4691358024691 162.0 predicted 1 1
HZ216630 Labrus bergylta 46.9135802469136 162.0 predicted 1 1
HZ289993 Labrus bergylta 57.3770491803279 183.0 predicted 1 1
HZ297981 Labrus bergylta 47.5409836065574 183.0 predicted 1 1
HZ305969 Labrus bergylta 61.7486338797814 183.0 predicted 1 1
HZ313957 Labrus bergylta 53.0054644808743 183.0 predicted 1 1
HZ321945 Labrus bergylta 49.7267759562842 183.0 predicted 1 1
LF442106 Labrus bergylta 56.140350877193 342.0 predicted 1 1
LF477504 Labrus bergylta 47.3684210526316 342.0 predicted 1 1
LF512902 Labrus bergylta 54.093567251462 342.0 predicted 1 1
LF548300 Labrus bergylta 49.7076023391813 342.0 predicted 1 1
LF583698 Labrus bergylta 43.5672514619883 342.0 predicted 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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