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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

23 rows where Is_annotated = 1 and Species_name = "Oncorhynchus mykiss"

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These facets timed out: Is_protein_coding_sequence, Species_name

Sequence_status 1

  • observed 23

Is_annotated 1

  • 1 · 23 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
DD146977 Oncorhynchus mykiss 47.0489038785835 593.0 observed 1 1
DD287600 Oncorhynchus mykiss 47.1354166666667 384.0 observed 1 1
DD287603 Oncorhynchus mykiss 52.020202020202 198.0 observed 1 1
DD287609 Oncorhynchus mykiss 48.1152993348115 451.0 observed 1 1
DD287611 Oncorhynchus mykiss 52.020202020202 198.0 observed 1 1
E02630 Oncorhynchus mykiss 52.60663507109 633.0 observed 1 1
E02631 Oncorhynchus mykiss 52.7646129541864 633.0 observed 1 1
E02632 Oncorhynchus mykiss 52.9225908372828 633.0 observed 1 1
E02633 Oncorhynchus mykiss 52.7336860670194 567.0 observed 1 1
GM743329 Oncorhynchus mykiss 50.1201923076923 832.0 observed 1 1
HH769994 Oncorhynchus mykiss 52.1577380952381 1344.0 observed 1 1
HV338461 Oncorhynchus mykiss 49.937106918239 795.0 observed 1 1
HV338462 Oncorhynchus mykiss 46.8926553672316 885.0 observed 1 1
LZ221732 Oncorhynchus mykiss 57.6190476190476 420.0 observed 1 1
LZ221738 Oncorhynchus mykiss 57.4789915966387 1785.0 observed 1 1
LZ221740 Oncorhynchus mykiss 57.9889807162534 726.0 observed 1 1
LZ221769 Oncorhynchus mykiss 54.7215496368039 1239.0 observed 1 1
LZ221770 Oncorhynchus mykiss 56.2053281351527 1539.0 observed 1 1
LZ221772 Oncorhynchus mykiss 52.7777777777778 828.0 observed 1 1
LZ221775 Oncorhynchus mykiss 58.9171974522293 942.0 observed 1 1
LZ221776 Oncorhynchus mykiss 53.1627576403696 1407.0 observed 1 1
LZ221786 Oncorhynchus mykiss 51.9900497512438 402.0 observed 1 1
LZ221794 Oncorhynchus mykiss 47.6510067114094 447.0 observed 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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