home / MABPAT_dataset

Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

12 rows where Is_annotated = 1 and Species_name = "Penaeus vannamei"

✎ View and edit SQL

This data as json, CSV (advanced)

These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
HC746391 Penaeus vannamei 46.8276515151515 2112.0 observed 1 1
LY824247 Penaeus vannamei 52.2522522522523 3219.0 observed 1 1
LY824250 Penaeus vannamei 52.1039603960396 2424.0 observed 1 1
LY824253 Penaeus vannamei 51.2414649286158 3222.0 observed 1 1
LY824256 Penaeus vannamei 52.0749665327979 2241.0 observed 1 1
LY824260 Penaeus vannamei 47.7104874446086 2031.0 observed 1 1
LY824263 Penaeus vannamei 49.1821771009588 1773.0 observed 1 1
LY824266 Penaeus vannamei 55.6969696969697 1650.0 observed 1 1
LY824268 Penaeus vannamei 63.2113821138211 492.0 observed 1 1
MA348907 Penaeus vannamei 60.2620087336245 229.0 observed 1 1
MA348913 Penaeus vannamei 62.2317596566524 233.0 observed 1 1
MA348916 Penaeus vannamei 62.7705627705628 231.0 observed 1 1

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options:

CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
Powered by Datasette · Queries took 5196.047ms · Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT