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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

14 rows where Is_annotated = 1 and Species_name = "Psychrobacter sp. mes7-p7e"

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These facets timed out: Is_annotated, Species_name

Sequence_status 1

  • predicted 14

Is_protein_coding_sequence 1

  • 1 14
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
HK474514 Psychrobacter sp. mes7-p7e 40.6716417910448 804.0 predicted 1 1
HK474806 Psychrobacter sp. mes7-p7e 32.5287356321839 870.0 predicted 1 1
HK474894 Psychrobacter sp. mes7-p7e 42.602495543672 561.0 predicted 1 1
HK475014 Psychrobacter sp. mes7-p7e 35.5345911949686 636.0 predicted 1 1
HK475167 Psychrobacter sp. mes7-p7e 42.6666666666667 750.0 predicted 1 1
HK475620 Psychrobacter sp. mes7-p7e 41.2238325281804 621.0 predicted 1 1
HK476214 Psychrobacter sp. mes7-p7e 42.1443736730361 942.0 predicted 1 1
HK476525 Psychrobacter sp. mes7-p7e 44.0476190476191 504.0 predicted 1 1
HK476884 Psychrobacter sp. mes7-p7e 36.231884057971 552.0 predicted 1 1
HK476924 Psychrobacter sp. mes7-p7e 41.2238325281804 621.0 predicted 1 1
HK477253 Psychrobacter sp. mes7-p7e 40.1234567901235 324.0 predicted 1 1
HK477378 Psychrobacter sp. mes7-p7e 34.8694316436252 651.0 predicted 1 1
HK477523 Psychrobacter sp. mes7-p7e 34.5588235294118 816.0 predicted 1 1
HL192218 Psychrobacter sp. mes7-p7e 53.0555555555556 1440.0 predicted 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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