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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

50 rows where Is_annotated = 1 and Species_name = "Pyrobaculum aerophilum"

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These facets timed out: Sequence_status, Is_annotated, Species_name

Is_protein_coding_sequence 1

  • 1 50
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
AX555783 Pyrobaculum aerophilum 50.240153698367 1041.0 observed 1 1
CS318869 Pyrobaculum aerophilum 55.609756097561 615.0 observed 1 1
DD236497 Pyrobaculum aerophilum 56.3876651982379 681.0 observed 1 1
FB335506 Pyrobaculum aerophilum 49.2329149232915 717.0 observed 1 1
FB784091 Pyrobaculum aerophilum 51.2328767123288 1095.0 observed 1 1
FB793687 Pyrobaculum aerophilum 47.6874003189793 627.0 observed 1 1
GM959428 Pyrobaculum aerophilum 53.574115876599 1329.0 observed 1 1
GN101145 Pyrobaculum aerophilum 49.1150442477876 1356.0 observed 1 1
GN102756 Pyrobaculum aerophilum 46.7224546722455 717.0 observed 1 1
GN128458 Pyrobaculum aerophilum 54.2458808618504 789.0 observed 1 1
HB437971 Pyrobaculum aerophilum 57.9601990049751 402.0 observed 1 1
HB444167 Pyrobaculum aerophilum 43.125 960.0 observed 1 1
HB444169 Pyrobaculum aerophilum 51.25 960.0 observed 1 1
HB444171 Pyrobaculum aerophilum 50.057273768614 873.0 observed 1 1
HB868306 Pyrobaculum aerophilum 51.0822510822511 693.0 observed 1 1
HB869014 Pyrobaculum aerophilum 57.1111111111111 900.0 observed 1 1
HB870827 Pyrobaculum aerophilum 48.224043715847 732.0 observed 1 1
HB880960 Pyrobaculum aerophilum 54.1293532338308 1005.0 observed 1 1
HB882023 Pyrobaculum aerophilum 48.2843137254902 1224.0 observed 1 1
HB884651 Pyrobaculum aerophilum 46.4317976513098 2214.0 observed 1 1
HB886177 Pyrobaculum aerophilum 48.5833333333333 1200.0 observed 1 1
HB886587 Pyrobaculum aerophilum 50.3472222222222 1152.0 observed 1 1
HB887385 Pyrobaculum aerophilum 50.5836575875486 771.0 observed 1 1
HB887387 Pyrobaculum aerophilum 50.314465408805 795.0 observed 1 1
HB892376 Pyrobaculum aerophilum 51.9877675840979 327.0 observed 1 1
HB896727 Pyrobaculum aerophilum 59.7130242825607 906.0 observed 1 1
HB897918 Pyrobaculum aerophilum 56.020942408377 573.0 observed 1 1
HB899245 Pyrobaculum aerophilum 46.9858156028369 564.0 observed 1 1
HB940072 Pyrobaculum aerophilum 52.7593818984547 906.0 observed 1 1
HB946340 Pyrobaculum aerophilum 50.9881422924901 1518.0 observed 1 1
HB958094 Pyrobaculum aerophilum 47.921760391198 1227.0 observed 1 1
HB958372 Pyrobaculum aerophilum 52.5977816695855 1713.0 observed 1 1
HC496638 Pyrobaculum aerophilum 56.078431372549 765.0 observed 1 1
HC744111 Pyrobaculum aerophilum 55.5876685934489 1038.0 observed 1 1
HC746104 Pyrobaculum aerophilum 52.5773195876289 873.0 observed 1 1
HC890631 Pyrobaculum aerophilum 54.5454545454545 2013.0 observed 1 1
HC890837 Pyrobaculum aerophilum 50.3067484662577 1956.0 observed 1 1
HC890839 Pyrobaculum aerophilum 58.9048378522063 1881.0 observed 1 1
HC890841 Pyrobaculum aerophilum 44.3181818181818 1848.0 observed 1 1
HC893055 Pyrobaculum aerophilum 55.1980198019802 1212.0 observed 1 1
HC893467 Pyrobaculum aerophilum 54.688731284476 1269.0 observed 1 1
HC897030 Pyrobaculum aerophilum 46.9298245614035 912.0 observed 1 1
HC897472 Pyrobaculum aerophilum 49.0620490620491 1386.0 observed 1 1
HC900132 Pyrobaculum aerophilum 58.005249343832 762.0 observed 1 1
HC912470 Pyrobaculum aerophilum 55.893536121673 789.0 observed 1 1
HV322083 Pyrobaculum aerophilum 53.0898876404494 1068.0 observed 1 1
JC958599 Pyrobaculum aerophilum 47.7011494252874 174.0 observed 1 1
JC958600 Pyrobaculum aerophilum 47.1264367816092 174.0 observed 1 1
JC958602 Pyrobaculum aerophilum 45.6140350877193 171.0 observed 1 1
MB126277 Pyrobaculum aerophilum 50.139470013947 1434.0 observed 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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