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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

11 rows where Is_annotated = 1 and Species_name = "Renilla reniformis"

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These facets timed out: Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_status 1

  • observed 11
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
AX456022 Renilla reniformis 36.6452991452991 936.0 observed 1 1
DD017653 Renilla reniformis 61.5277777777778 720.0 observed 1 1
HV191643 Renilla reniformis 36.5487674169346 933.0 observed 1 1
HV535459 Renilla reniformis 55.4126473740622 933.0 observed 1 1
HW934683 Renilla reniformis 36.4316239316239 936.0 observed 1 1
HZ405264 Renilla reniformis 55.2350427350427 936.0 observed 1 1
LP845957 Renilla reniformis 55.4845580404686 939.0 observed 1 1
LY657086 Renilla reniformis 36.5384615384615 936.0 observed 1 1
LY657087 Renilla reniformis 36.5487674169346 933.0 observed 1 1
MP447509 Renilla reniformis 55.1282051282051 936.0 observed 1 1
MP540948 Renilla reniformis 36.4316239316239 936.0 observed 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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