home / MABPAT_dataset

Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

15 rows where Is_protein_coding_sequence = 0, Sequence_length = "714.0" and Sequence_status = "observed"

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: GC_content

Species_name 5

  • Alexandrium minutum 10
  • Alexandrium tamarense 2
  • Anguilla japonica 1
  • Morone saxatilis 1
  • Penaeus japonicus 1

Sequence_status 1

  • observed · 15 ✖

Is_protein_coding_sequence 1

  • - · 15 ✖

Is_annotated 1

  • 0 15
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
AX804272 Morone saxatilis 51.9607843137255 714.0 observed 0 0
DM012460 Anguilla japonica 48.7394957983193 714.0 observed 0 0
HW609706 Penaeus japonicus 49.2997198879552 714.0 observed 0 0
HW639224 Alexandrium minutum 63.7254901960784 714.0 observed 0 0
HW639225 Alexandrium minutum 63.7254901960784 714.0 observed 0 0
HW639226 Alexandrium minutum 63.5854341736695 714.0 observed 0 0
HW639236 Alexandrium tamarense 64.8459383753501 714.0 observed 0 0
HW639250 Alexandrium minutum 64.1456582633053 714.0 observed 0 0
HW639251 Alexandrium minutum 63.8655462184874 714.0 observed 0 0
JC486437 Alexandrium minutum 63.7254901960784 714.0 observed 0 0
JC486438 Alexandrium minutum 63.7254901960784 714.0 observed 0 0
JC486439 Alexandrium minutum 63.5854341736695 714.0 observed 0 0
JC486449 Alexandrium tamarense 64.8459383753501 714.0 observed 0 0
JC486463 Alexandrium minutum 64.1456582633053 714.0 observed 0 0
JC486464 Alexandrium minutum 63.8655462184874 714.0 observed 0 0

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options:

CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
Powered by Datasette · Queries took 700.933ms · Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT