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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

13 rows where Is_protein_coding_sequence = 0 and Species_name = "Acropora millepora"

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These facets timed out: Sequence_status, Species_name

Is_protein_coding_sequence 1

  • - · 13 ✖

Is_annotated 1

  • 0 13
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
CS079416 Acropora millepora 44.6693657219973 741.0 observed 0 0
CS079418 Acropora millepora 44.0210249671485 761.0 observed 0 0
CS079419 Acropora millepora 44.3569553805774 762.0 observed 0 0
CS079420 Acropora millepora 44.8818897637795 762.0 observed 0 0
CS079421 Acropora millepora 43.859649122807 741.0 observed 0 0
CS079422 Acropora millepora 45.8333333333333 744.0 observed 0 0
CS079423 Acropora millepora 46.1322081575246 711.0 observed 0 0
CS079468 Acropora millepora 45.3216374269006 684.0 observed 0 0
CS079471 Acropora millepora 44.9093444909345 717.0 observed 0 0
CS079472 Acropora millepora 45.4672245467225 717.0 observed 0 0
CS079473 Acropora millepora 44.5906432748538 684.0 observed 0 0
CS079474 Acropora millepora 46.433770014556 687.0 observed 0 0
CS079475 Acropora millepora 46.996996996997 666.0 observed 0 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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