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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

15 rows where Is_protein_coding_sequence = 0 and Species_name = "Ecteinascidia turbinata"

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
JA637490 Ecteinascidia turbinata 21.3373253493014 10020.0 observed 0 0
JA637493 Ecteinascidia turbinata 24.2078580481622 789.0 observed 0 0
JA637494 Ecteinascidia turbinata 19.7814207650273 915.0 observed 0 0
JA637496 Ecteinascidia turbinata 29.8200514138817 1167.0 observed 0 0
JA637497 Ecteinascidia turbinata 24.1830065359477 459.0 observed 0 0
JA637498 Ecteinascidia turbinata 23.5870048954161 2247.0 observed 0 0
JA637499 Ecteinascidia turbinata 23.75 480.0 observed 0 0
JA637501 Ecteinascidia turbinata 21.8702865761689 663.0 observed 0 0
JA637502 Ecteinascidia turbinata 22.6557152635181 1461.0 observed 0 0
JA637503 Ecteinascidia turbinata 30.0338409475465 1182.0 observed 0 0
JA637504 Ecteinascidia turbinata 17.4193548387097 310.0 observed 0 0
JA637505 Ecteinascidia turbinata 24.5813797722706 1493.0 observed 0 0
JA637509 Ecteinascidia turbinata 19.0058479532164 342.0 observed 0 0
JA637510 Ecteinascidia turbinata 27.9012345679012 405.0 observed 0 0
JA637511 Ecteinascidia turbinata 24.6187363834423 918.0 observed 0 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
Powered by Datasette · Queries took 7286.603ms · Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT