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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

7 rows where Is_protein_coding_sequence = 0 and Species_name = "Ostreococcus sp. 'lucimarinus'organisms"

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These facets timed out: Is_protein_coding_sequence

Species_name 1

  • Ostreococcus sp. 'lucimarinus'organisms · 7 ✖

Sequence_status 1

  • observed 7

Is_annotated 1

  • 0 7
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
LQ424905 Ostreococcus sp. 'lucimarinus'organisms 63.7382075471698 1696.0 observed 0 0
LQ424907 Ostreococcus sp. 'lucimarinus'organisms 62.9230014713095 2039.0 observed 0 0
LQ424909 Ostreococcus sp. 'lucimarinus'organisms 58.4916522740357 1737.0 observed 0 0
LQ424911 Ostreococcus sp. 'lucimarinus'organisms 59.2269326683292 1604.0 observed 0 0
LQ424913 Ostreococcus sp. 'lucimarinus'organisms 66.1297344362212 2297.0 observed 0 0
LQ424915 Ostreococcus sp. 'lucimarinus'organisms 59.0651558073654 1412.0 observed 0 0
LQ424917 Ostreococcus sp. 'lucimarinus'organisms 58.7385652383245 2077.0 observed 0 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
Powered by Datasette · Queries took 3252.277ms · Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT