home / MABPAT_dataset

Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

26 rows where Is_protein_coding_sequence = 0 and Species_name = "Pagrus major"

✎ View and edit SQL

This data as json, CSV (advanced)

These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
CS026809 Pagrus major 50.1449275362319 1035.0 observed 0 0
E08614 Pagrus major 50.3968253968254 2520.0 observed 0 0
HB872251 Pagrus major 51.8195050946143 2748.0 observed 0 0
HB872253 Pagrus major 57.0324189526185 4010.0 observed 0 0
HB873511 Pagrus major 51.8195050946143 2748.0 observed 0 0
HB873513 Pagrus major 57.0324189526185 4010.0 observed 0 0
HB875382 Pagrus major 51.8195050946143 2748.0 observed 0 0
HB875384 Pagrus major 57.0324189526185 4010.0 observed 0 0
HB879892 Pagrus major 51.8195050946143 2748.0 observed 0 0
HB879894 Pagrus major 57.0324189526185 4010.0 observed 0 0
HB888627 Pagrus major 51.8195050946143 2748.0 observed 0 0
HB888629 Pagrus major 57.0324189526185 4010.0 observed 0 0
HB921436 Pagrus major 51.8195050946143 2748.0 observed 0 0
HB921438 Pagrus major 57.0324189526185 4010.0 observed 0 0
HC929660 Pagrus major 51.8195050946143 2748.0 observed 0 0
HC929662 Pagrus major 57.0324189526185 4010.0 observed 0 0
HC930920 Pagrus major 51.8195050946143 2748.0 observed 0 0
HC930922 Pagrus major 57.0324189526185 4010.0 observed 0 0
HC932791 Pagrus major 51.8195050946143 2748.0 observed 0 0
HC932793 Pagrus major 57.0324189526185 4010.0 observed 0 0
HC937301 Pagrus major 51.8195050946143 2748.0 observed 0 0
HC937303 Pagrus major 57.0324189526185 4010.0 observed 0 0
HC946036 Pagrus major 51.8195050946143 2748.0 observed 0 0
HC946038 Pagrus major 57.0324189526185 4010.0 observed 0 0
HC978845 Pagrus major 51.8195050946143 2748.0 observed 0 0
HC978847 Pagrus major 57.0324189526185 4010.0 observed 0 0

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options:

CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
Powered by Datasette · Queries took 5628.484ms · Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT