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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

28 rows where Is_protein_coding_sequence = 1, Sequence_status = "observed" and Species_name = "Discosoma sp."

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These facets timed out: Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_status 1

  • observed · 28 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
AX172854 Discosoma sp. 45.2802359882006 678.0 observed 1 0
AX207715 Discosoma sp. 45.2802359882006 678.0 observed 1 0
AX233581 Discosoma sp. 45.2802359882006 678.0 observed 1 0
AX699923 Discosoma sp. 47.085201793722 669.0 observed 1 1
AX699929 Discosoma sp. 47.5336322869955 669.0 observed 1 1
AX815529 Discosoma sp. 45.2970297029703 404.0 observed 1 1
BD354645 Discosoma sp. 45.4277286135693 678.0 observed 1 0
DD220327 Discosoma sp. 45.2802359882006 678.0 observed 1 0
DD258989 Discosoma sp. 63.716814159292 678.0 observed 1 1
DJ380376 Discosoma sp. 45.2802359882006 678.0 observed 1 0
DL175325 Discosoma sp. 45.4277286135693 678.0 observed 1 0
FB660036 Discosoma sp. 45.4277286135693 678.0 observed 1 1
FW347302 Discosoma sp. 45.2802359882006 678.0 observed 1 0
GN363916 Discosoma sp. 45.4277286135693 678.0 observed 1 0
HB977103 Discosoma sp. 63.9416058394161 685.0 observed 1 0
HD119633 Discosoma sp. 57.7363896848138 698.0 observed 1 1
HW507096 Discosoma sp. 46.2882096069869 687.0 observed 1 0
HW507097 Discosoma sp. 46.433770014556 687.0 observed 1 0
HW507098 Discosoma sp. 46.5793304221252 687.0 observed 1 0
HW507099 Discosoma sp. 46.2882096069869 687.0 observed 1 0
JB027414 Discosoma sp. 62.4649859943978 714.0 observed 1 0
MB463544 Discosoma sp. 63.9416058394161 685.0 observed 1 1
MC003104 Discosoma sp. 45.2802359882006 678.0 observed 1 0
MS954945 Discosoma sp. 63.9416058394161 685.0 observed 1 0
OF097876 Discosoma sp. 64.306784660767 678.0 observed 1 1
OF097877 Discosoma sp. 63.716814159292 678.0 observed 1 0
OF097879 Discosoma sp. 62.7285513361463 711.0 observed 1 1
OF097885 Discosoma sp. 56.8767908309456 698.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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