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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

88 rows where Is_protein_coding_sequence = 1, Sequence_status = "observed" and Species_name = "Rebecca salina"

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
HH982401 Rebecca salina 63.4817813765182 1235.0 observed 1 0
HH982403 Rebecca salina 60.0660066006601 909.0 observed 1 0
HH982405 Rebecca salina 56.7213114754098 915.0 observed 1 0
HH982408 Rebecca salina 66.4434523809524 1344.0 observed 1 0
HH982455 Rebecca salina 64.3974960876369 1278.0 observed 1 0
HV757246 Rebecca salina 63.3177570093458 1284.0 observed 1 0
HV757247 Rebecca salina 64.3974960876369 1278.0 observed 1 0
HV757281 Rebecca salina 66.4434523809524 1344.0 observed 1 0
HV757299 Rebecca salina 58.3333333333333 840.0 observed 1 1
HZ406861 Rebecca salina 64.3974960876369 1278.0 observed 1 0
HZ406869 Rebecca salina 66.4434523809524 1344.0 observed 1 0
HZ406876 Rebecca salina 58.3333333333333 840.0 observed 1 0
HZ406877 Rebecca salina 63.3177570093458 1284.0 observed 1 0
HZ471278 Rebecca salina 63.3177570093458 1284.0 observed 1 0
HZ471279 Rebecca salina 64.3974960876369 1278.0 observed 1 0
HZ471313 Rebecca salina 66.4434523809524 1344.0 observed 1 0
HZ471331 Rebecca salina 58.3333333333333 840.0 observed 1 0
HZ785041 Rebecca salina 64.3974960876369 1278.0 observed 1 0
HZ785042 Rebecca salina 59.922480620155 1290.0 observed 1 0
JA663704 Rebecca salina 63.3177570093458 1284.0 observed 1 0
JA663706 Rebecca salina 64.3974960876369 1278.0 observed 1 0
JA663753 Rebecca salina 66.4434523809524 1344.0 observed 1 0
JA663776 Rebecca salina 58.3333333333333 840.0 observed 1 0
JC257352 Rebecca salina 63.4817813765182 1235.0 observed 1 0
JC257354 Rebecca salina 60.0660066006601 909.0 observed 1 1
JC257356 Rebecca salina 56.7213114754098 915.0 observed 1 0
JC257359 Rebecca salina 66.4434523809524 1344.0 observed 1 0
JC257406 Rebecca salina 64.3974960876369 1278.0 observed 1 0
JC318886 Rebecca salina 63.4817813765182 1235.0 observed 1 0
JC318888 Rebecca salina 60.0660066006601 909.0 observed 1 0
JC318890 Rebecca salina 56.7213114754098 915.0 observed 1 0
JC318893 Rebecca salina 66.4434523809524 1344.0 observed 1 0
JC318940 Rebecca salina 64.3974960876369 1278.0 observed 1 0
JC442094 Rebecca salina 63.4817813765182 1235.0 observed 1 0
JC442096 Rebecca salina 60.0660066006601 909.0 observed 1 0
JC442098 Rebecca salina 56.7213114754098 915.0 observed 1 0
JC442101 Rebecca salina 66.4434523809524 1344.0 observed 1 0
JC442148 Rebecca salina 64.3974960876369 1278.0 observed 1 0
LG045240 Rebecca salina 64.3974960876369 1278.0 observed 1 0
LG045248 Rebecca salina 66.4434523809524 1344.0 observed 1 0
LG045255 Rebecca salina 58.3333333333333 840.0 observed 1 0
LG045256 Rebecca salina 63.3177570093458 1284.0 observed 1 0
LP053815 Rebecca salina 64.3974960876369 1278.0 observed 1 0
LP053826 Rebecca salina 66.4434523809524 1344.0 observed 1 0
LP053837 Rebecca salina 58.3333333333333 840.0 observed 1 0
LP053839 Rebecca salina 63.3177570093458 1284.0 observed 1 0
LQ654804 Rebecca salina 64.3974960876369 1278.0 observed 1 0
LQ654812 Rebecca salina 66.4434523809524 1344.0 observed 1 0
LQ654820 Rebecca salina 58.3333333333333 840.0 observed 1 0
LQ654822 Rebecca salina 63.3177570093458 1284.0 observed 1 0
LV578316 Rebecca salina 64.3974960876369 1278.0 observed 1 0
LV578321 Rebecca salina 66.4434523809524 1344.0 observed 1 0
LV578325 Rebecca salina 58.3333333333333 840.0 observed 1 0
LV578326 Rebecca salina 63.3177570093458 1284.0 observed 1 0
LY344956 Rebecca salina 64.3974960876369 1278.0 observed 1 0
LY344961 Rebecca salina 66.4434523809524 1344.0 observed 1 0
LY344965 Rebecca salina 58.3333333333333 840.0 observed 1 0
LY344966 Rebecca salina 63.3177570093458 1284.0 observed 1 0
LY503274 Rebecca salina 64.3974960876369 1278.0 observed 1 0
LY503279 Rebecca salina 66.4434523809524 1344.0 observed 1 0
LY503283 Rebecca salina 58.3333333333333 840.0 observed 1 0
LY503284 Rebecca salina 63.3177570093458 1284.0 observed 1 0
LZ951263 Rebecca salina 64.3974960876369 1278.0 observed 1 0
LZ951264 Rebecca salina 59.922480620155 1290.0 observed 1 0
LZ992511 Rebecca salina 64.3974960876369 1278.0 observed 1 0
LZ992516 Rebecca salina 66.4434523809524 1344.0 observed 1 0
LZ992520 Rebecca salina 58.3333333333333 840.0 observed 1 0
LZ992521 Rebecca salina 63.3177570093458 1284.0 observed 1 0
MA350455 Rebecca salina 64.3974960876369 1278.0 observed 1 0
MA350463 Rebecca salina 66.4434523809524 1344.0 observed 1 0
MA350470 Rebecca salina 58.3333333333333 840.0 observed 1 0
MA350471 Rebecca salina 63.3177570093458 1284.0 observed 1 0
MA851902 Rebecca salina 63.3177570093458 1284.0 observed 1 0
MA851903 Rebecca salina 64.3974960876369 1278.0 observed 1 0
MA851937 Rebecca salina 66.4434523809524 1344.0 observed 1 0
MA851955 Rebecca salina 58.3333333333333 840.0 observed 1 0
MA851995 Rebecca salina 63.3177570093458 1284.0 observed 1 0
MA851996 Rebecca salina 64.3974960876369 1278.0 observed 1 0
MA852030 Rebecca salina 66.4434523809524 1344.0 observed 1 0
MA852048 Rebecca salina 58.3333333333333 840.0 observed 1 0
MS814986 Rebecca salina 64.3974960876369 1278.0 observed 1 0
MS814994 Rebecca salina 66.4434523809524 1344.0 observed 1 0
MS815002 Rebecca salina 58.3333333333333 840.0 observed 1 0
MS815004 Rebecca salina 63.3177570093458 1284.0 observed 1 0
OF040695 Rebecca salina 64.3974960876369 1278.0 observed 1 0
OF040703 Rebecca salina 66.4434523809524 1344.0 observed 1 0
OF040710 Rebecca salina 58.3333333333333 840.0 observed 1 0
OF040711 Rebecca salina 63.3177570093458 1284.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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