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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

18 rows where Is_protein_coding_sequence = 1 and Species_name = "Alcanivorax sp"

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These facets timed out: Sequence_status, Is_protein_coding_sequence, Is_annotated, Species_name

Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
GM998856 Alcanivorax sp 60.2083333333333 480.0 predicted 1 1
GM999010 Alcanivorax sp 64.12092283214 1257.0 predicted 1 1
GM999017 Alcanivorax sp 60.9375 192.0 predicted 1 1
GM999018 Alcanivorax sp 55.8823529411765 510.0 predicted 1 1
GM999081 Alcanivorax sp 69.4871794871795 390.0 predicted 1 1
GM999083 Alcanivorax sp 60.1092896174863 183.0 predicted 1 1
GM999088 Alcanivorax sp 68.019943019943 1404.0 predicted 1 1
GM999189 Alcanivorax sp 68.0933852140078 1542.0 predicted 1 1
GM999267 Alcanivorax sp 69.9546485260771 1764.0 predicted 1 1
HK677170 Alcanivorax sp 69.1202872531418 1671.0 predicted 1 1
HL835890 Alcanivorax sp 62.2093023255814 1548.0 predicted 1 1
HL838662 Alcanivorax sp 70.0280112044818 357.0 predicted 1 1
MS916807 Alcanivorax sp 68.7214611872146 876.0 predicted 1 1
MS916809 Alcanivorax sp 64.7272727272727 825.0 predicted 1 1
MS916811 Alcanivorax sp 69.0349319123742 1689.0 predicted 1 1
MS916818 Alcanivorax sp 64.769647696477 738.0 predicted 1 1
MS916822 Alcanivorax sp 65.5971479500891 561.0 predicted 1 1
MS916830 Alcanivorax sp 67.6657584014532 2202.0 predicted 1 1

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
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