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Marine_Sequences

Provides detailed information about each marine genetic sequence, including its GC content, sequence length, and whether it contains protein-coding information.

Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT

Sequence_accession_number
Unique identifier for the genetic sequence as specified in INSDC databases (Primary Key). Searchable
Species_name
Species associated with the sequence, linking to the Marine Species table. Searchable
GC_content
GC content of the sequence
Sequence_length
Length of the sequence
Sequence_status
Status of the sequence (e.g., confirmed, predicted)
Is_protein_coding_sequence
Indicates if the sequence is protein-coding (1 for yes, 0 for no)
Is_annotated
Indicates if the sequence has been annotated (1 for yes, 0 for no)

28 rows where Is_protein_coding_sequence = 1 and Species_name = "Aliivibrio fischeri"

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These facets timed out: Sequence_status, Is_protein_coding_sequence

Is_annotated 2

  • 1 15
  • 0 13

Species_name 1

  • Aliivibrio fischeri · 28 ✖
Sequence_accession_number ▼ Species_name GC_content Sequence_length Sequence_status Is_protein_coding_sequence Is_annotated
AX168071 Aliivibrio fischeri 43.0379746835443 711.0 observed 1 1
AX930573 Aliivibrio fischeri 38.3863080684597 3681.0 observed 1 1
BD326247 Aliivibrio fischeri 43.0379746835443 711.0 observed 1 0
CS175388 Aliivibrio fischeri 43.8254410399257 3231.0 observed 1 1
DM463940 Aliivibrio fischeri 38.9671361502347 1278.0 observed 1 1
E06567 Aliivibrio fischeri 28.0060882800609 657.0 observed 1 0
E06569 Aliivibrio fischeri 36.3774733637747 657.0 observed 1 1
FB335584 Aliivibrio fischeri 38.7596899224806 774.0 observed 1 1
GN117234 Aliivibrio fischeri 39.9463806970509 1119.0 observed 1 1
HB898111 Aliivibrio fischeri 33.6805555555556 288.0 observed 1 1
HB911546 Aliivibrio fischeri 39.6588486140725 1407.0 observed 1 1
HB935214 Aliivibrio fischeri 39.6588486140725 1407.0 observed 1 0
HB971232 Aliivibrio fischeri 42.4242424242424 627.0 observed 1 1
HC197721 Aliivibrio fischeri 38.9671361502347 1278.0 observed 1 0
HC509215 Aliivibrio fischeri 44.57111834962 1842.0 observed 1 0
HC509884 Aliivibrio fischeri 44.57111834962 1842.0 observed 1 0
HC907753 Aliivibrio fischeri 38.4976525821596 852.0 observed 1 1
HC924495 Aliivibrio fischeri 36.8577494692144 2355.0 observed 1 1
HC955520 Aliivibrio fischeri 33.6805555555556 288.0 observed 1 0
HC968955 Aliivibrio fischeri 39.6588486140725 1407.0 observed 1 0
HC992623 Aliivibrio fischeri 39.6588486140725 1407.0 observed 1 0
HD028642 Aliivibrio fischeri 42.4242424242424 627.0 observed 1 0
HH766923 Aliivibrio fischeri 38.7596899224806 774.0 observed 1 0
HW057562 Aliivibrio fischeri 39.514348785872 453.0 observed 1 1
HW066177 Aliivibrio fischeri 39.514348785872 453.0 observed 1 0
HW313979 Aliivibrio fischeri 33.1926863572433 711.0 observed 1 1
JC738638 Aliivibrio fischeri 44.57111834962 1842.0 observed 1 1
LQ006024 Aliivibrio fischeri 33.8235294117647 612.0 observed 1 0

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CREATE TABLE Marine_Sequences (
        Sequence_accession_number TEXT PRIMARY KEY,
        Species_name TEXT,
        GC_content TEXT,
        Sequence_length TEXT,
        Sequence_status TEXT,
        Is_protein_coding_sequence INTEGER,
        Is_annotated INTEGER,
        FOREIGN KEY (Species_name) REFERENCES Marine_Species (Species_name),
        FOREIGN KEY (Sequence_accession_number) REFERENCES Sequences (Sequence_accession_number)
    );
Powered by Datasette · Queries took 4320.035ms · Data license: CC BY 4.0 · Data source: Novel dataset reveals growing prominence of deep-sea life for marine bioprospecting · About: About MABPAT